CK739853

Overview
NameCK739853
Unique NameCK739853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length290
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2542 contig Csv1_Contig2542:360..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.021e-39
Identity = 74/96 (77.08%), Postives = 82/96 (85.42%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK 289
            TNSNY EL+ LY KYK+QG EILAFPCNQFG QEPG NE+IQ FACTRFKAE+P+F KV+VNG  A PLYK LKSSKGG  GDSIKWNF+KFLVD+
Sbjct:   57 TNSNYPELTTLYQKYKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDR 152          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.970e-39
Identity = 69/96 (71.88%), Postives = 87/96 (90.62%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK 289
            TNSNYTEL++LY++YK++GLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIF+K++VNG+NA+PLYK LK  K G+FGD I+WNF+KFLVDK
Sbjct:   44 TNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGIFGDDIQWNFAKFLVDK 139          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX1_ARATH (Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.289e-38
Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK 289
            T+SNY+ELS LY+KYK QG EILAFPCNQFG QEPG N +I++FACTRFKAEFPIFDKVDVNG + AP+Y+ LKS+ GG  G  IKWNF KFL+DK
Sbjct:  114 TSSNYSELSHLYEKYKTQGFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDK 209          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.630e-37
Identity = 71/94 (75.53%), Postives = 82/94 (87.23%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLV 283
            T++NY EL+ LY+KYK QGLEILAFPCNQF  QEPG+NE+IQ+  CTRFKAEFPIFDKVDVNG N APLYK+LK+ KGGL  D+IKWNF+KFLV
Sbjct:   44 TDANYKELNVLYEKYKEQGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLLIDAIKWNFTKFLV 137          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.526e-35
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK 289
            T+ NY E++ LY KYK QG EILAFPCNQFG+QEPG N +I+E  C  FKAEFPIFDK++VNG N  PLY  LK  KGGLFGD+IKWNF+KFLVD+
Sbjct:   83 THGNYKEMNILYAKYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGLFGDAIKWNFAKFLVDR 178          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.992e-35
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK 289
            TN++Y EL+Q+Y KYK +G EILAFPCNQFG QEPG NE+I +F CT+FK+EFPIFDK+DVNG+NAAP+Y+ LK+   G+ G  I+WNFSKFLVDK
Sbjct:   44 TNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYGILGGDIQWNFSKFLVDK 139          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.154e-33
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK 289
            T SNYT+L++LY KYK+QG  +LAFPCNQF +QEPG +E+  +FACTRFKAE+P+F KV VNG NAAP+YK LKS K    G  IKWNF+KFLV K
Sbjct:   49 TESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGSRIKWNFTKFLVGK 144          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.835e-32
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK 289
            T +NYT+L++LY KYK+Q  EILAFPCNQF  QEPG +++  EFAC RFKAE+P+F KV VNG NAAP+YK LK+SK    G  IKWNF+KFLV K
Sbjct:   47 TETNYTQLTELYRKYKDQDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASKPTFLGSRIKWNFTKFLVGK 142          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.359e-28
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK 289
            TNSNY +  +L D YK  GLE+LAFPCNQFG QEP     I  F   +FK E  +F K+DVNGDN APLYK LK  KGG   D+IKWNF+KFLV +
Sbjct:   39 TNSNYNQFKELLDVYKKDGLEVLAFPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDAIKWNFTKFLVGR 134          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.997e-27
Identity = 55/96 (57.29%), Postives = 67/96 (69.79%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK 289
            TN NYT+L +L D YK  GLE+LAFPCNQF  QEP     IQ F   +FK E  +F K+DVNGD  +PL+K LK+ KGG   D+IKWNF+KFLV +
Sbjct:   39 TNKNYTQLKELLDVYKKDGLEVLAFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDAIKWNFTKFLVGR 134          
The following BLAST results are available for this feature:
BLAST of CK739853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GPX4_HELAN1.021e-3977.08Probable phospholipid hydroperoxide glutathione pe... [more]
GPX8_ARATH2.970e-3971.88Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX1_ARATH4.289e-3872.92Phospholipid hydroperoxide glutathione peroxidase ... [more]
GPX2_ARATH1.630e-3775.53Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX3_ARATH1.526e-3568.75Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX1_HELAN1.992e-3567.71Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX5_ARATH4.154e-3365.63Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX4_ARATH7.835e-3264.58Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX2_CAEEL2.359e-2859.38Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]
GPX1_CAEEL1.997e-2757.29Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6243 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739853 ID=CK739853; Name=CK739853; organism=Citrus sinensis; type=EST; length=290bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGG
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