CK739853

Overview
NameCK739853
Unique NameCK739853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length290
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX_ENCCU (Probable phospholipid hydroperoxide glutathione peroxidase OS=Encephalitozoon cuniculi GN=ECU02_0440 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.410e-18
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG--GLFGDSIKWNFSKFLVDK 289
            SNY   + L DK+  +GL IL FPCNQ+  QE    E+I+     ++   F +FDKVDV G  A P+++HL ++K   G  G+ IKWNF+KFLVD+
Sbjct:   47 SNYKSFAGLLDKFYRKGLRILLFPCNQYLGQESRPIEEIRGEVSKKYSDRFVVFDKVDVFGKGAHPVFRHLVNTKNGKGRLGNFIKWNFTKFLVDR 142          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX1_CHLRE (Glutathione peroxidase 1, mitochondrial OS=Chlamydomonas reinhardtii GN=GPX PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.098e-17
Identity = 49/96 (51.04%), Postives = 58/96 (60.42%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR--FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLV 283
            T +NY E + L  KY    L I+AFPCNQFG QEPG N +I+ FA  R    A   + DKVDVNG NA+P+Y  LK + G      I WNF KFLV
Sbjct:   78 TAANYKEFATLLGKYPATDLTIVAFPCNQFGGQEPGTNAEIKAFASARGFSGAGALLMDKVDVNGANASPVYNFLKVAAGDT--SDIGWNFGKFLV 171          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMF (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gpxA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.435e-17
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDK 289
            Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV++
Sbjct:   41 YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNR 152          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMC (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C GN=gpxA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.435e-17
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDK 289
            Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV++
Sbjct:   41 YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNR 152          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMB (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup B GN=gpxA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.435e-17
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDK 289
            Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV++
Sbjct:   41 YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNR 152          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMA (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup A GN=gpxA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.435e-17
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDK 289
            Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV++
Sbjct:   41 YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNR 152          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX7_MOUSE (Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.907e-15
Identity = 40/95 (42.11%), Postives = 51/95 (53.68%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVD 286
            T+ NY  L QL          +LAFPCNQFG QEP  N +I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LVD
Sbjct:   59 TDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTS----GKEPTWNFWKYLVD 149          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX8B_XENLA (Probable glutathione peroxidase 8-B OS=Xenopus laevis GN=gpx8-B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.484e-14
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVD 286
            T +NY  L +L+ ++      +LAFPCNQFG  EPG N++I+  A   +   FP+F K+ + G  A P Y+ L  S         +WNF K+LVD
Sbjct:   82 TEANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNKEIEAMAKRNYGVTFPVFSKIKILGSEAEPAYRFLVDST----KKEPRWNFWKYLVD 172          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: BTUE_ECOLI (Vitamin B12 transport periplasmic protein btuE OS=Escherichia coli (strain K12) GN=btuE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.532e-14
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHL--------------------KSSKGGLFGDSIKWNFSKFLVDK 289
            Y +L  +   + ++G  +L FPCNQF  QEPG +E+I+ +  T +   FP+F K++VNG+   PLY+ L                       +  L+ D I WNF KFLV +
Sbjct:   43 YEQLENIQKAWVDRGFMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGR 154          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX7_HUMAN (Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.319e-14
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLV 283
            T+ +Y  L QL          +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LV
Sbjct:   60 TDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----GKEPTWNFWKYLV 149          
The following BLAST results are available for this feature:
BLAST of CK739853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GPX_ENCCU8.410e-1845.83Probable phospholipid hydroperoxide glutathione pe... [more]
GPX1_CHLRE1.098e-1751.04Glutathione peroxidase 1, mitochondrial OS=Chlamyd... [more]
GPXA_NEIMF1.435e-1743.75Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMC1.435e-1743.75Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMB1.435e-1743.75Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMA1.435e-1743.75Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPX7_MOUSE3.907e-1542.11Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 P... [more]
GPX8B_XENLA1.484e-1438.95Probable glutathione peroxidase 8-B OS=Xenopus lae... [more]
BTUE_ECOLI2.532e-1433.93Vitamin B12 transport periplasmic protein btuE OS=... [more]
GPX7_HUMAN4.319e-1440.43Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6243 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739853 ID=CK739853; Name=CK739853; organism=Citrus sinensis; type=EST; length=290bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGG
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