CK739853

Overview
NameCK739853
Unique NameCK739853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length290
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX7_BOVIN (Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.319e-14
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLV 283
            T+ +Y  L QL          +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LV
Sbjct:   59 TDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTETS----GKEPTWNFWKYLV 148          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX6_HUMAN (Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.367e-14
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI---QEFAC--TRFKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLV 283
            + Y EL+ L ++ KN G+ +LAFPCNQFG QEPG N +I    ++ C  + F   F +F+K DVNG+    ++  LK+S      L G S            I+WNF KFLV
Sbjct:   77 AQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLV 188          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX8A_XENLA (Probable glutathione peroxidase 8-A OS=Xenopus laevis GN=gpx8-A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.144e-13
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVD 286
            +NY  L +L+ ++      +LAFPCNQFG  EPG N++I   A   +   FP+F K+ + G  A P Y+ L  S         +WNF K+LVD
Sbjct:   84 ANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNQEIGALAKRNYGVTFPMFSKIKILGSEAEPAYRFLVDST----KKEPRWNFWKYLVD 172          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX3_CAEEL (Glutathione peroxidase OS=Caenorhabditis elegans GN=C11E4.2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.775e-13
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK--------AEFPIFDKVDVNGDNAAPLYKHLKSS------KGGLFGD---------SIKWNFSKFLVDK 289
            YT+ + + +KY+ QGL ++AFPCNQF  QEP +N ++     T  +         E  I+ K+DVNGDN  PLY+ +K S      K G   +          I WNF KFL+D+
Sbjct:   79 YTDFNPMLEKYQAQGLTLVAFPCNQFYLQEPAENHELMN-GLTYVRPGNGWTPHQELHIYGKIDVNGDNHHPLYEFVKESCPQTVDKIGKTDELMYNPVRPSDITWNFEKFLIDR 192          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX8_BOVIN (Probable glutathione peroxidase 8 OS=Bos taurus GN=GPX8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.815e-12
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVD 286
            T+ NY  L +L+ ++      +LAFPCNQFG  EP  ++++  FA   F   FPIF K+ + G  A P ++ L  S         +WNF K+LV+
Sbjct:   82 TDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFLVDSS----KKEPRWNFWKYLVN 172          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX8_HUMAN (Probable glutathione peroxidase 8 OS=Homo sapiens GN=GPX8 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.095e-12
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVD 286
            T+ NY  L +L+ ++      +LAFPCNQFG  EP  +++++ FA   +   FPIF K+ + G    P ++ L  S         +WNF K+LV+
Sbjct:   82 TDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKEPRWNFWKYLVN 172          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX8_MOUSE (Probable glutathione peroxidase 8 OS=Mus musculus GN=Gpx8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.896e-12
Identity = 32/95 (33.68%), Postives = 53/95 (55.79%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVD 286
            T+ +Y  L +L+ ++      +LAFPCNQFG  EP  +++++ FA   +   FPIF K+ + G  A P ++ +  S         +WNF K+LV+
Sbjct:   82 TDKSYQTLRELHKEFGPYHFNVLAFPCNQFGESEPKSSKEVESFARQNYGVTFPIFHKIKILGPEAEPAFRFIVDSS----KKEPRWNFWKYLVN 172          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX3_RAT (Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.896e-12
Identity = 45/110 (40.91%), Postives = 56/110 (50.91%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLV 283
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+          S G LF +      I+WNF KFLV
Sbjct:   79 YLELNALQEELGPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLV 188          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX3_CEBAP (Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.896e-12
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLV 283
            Y EL+ L ++    GL++L FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV
Sbjct:   79 YIELNALQEELAPFGLDLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLV 188          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX5_MACFA (Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.006e-12
Identity = 43/112 (38.39%), Postives = 57/112 (50.89%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFG------------DSIKWNFSKFLV 283
            + Y EL+ L ++ K  GL +L FPCNQFG QEPGDN++I       R    F   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV
Sbjct:   77 AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLV 188          
The following BLAST results are available for this feature:
BLAST of CK739853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GPX7_BOVIN4.319e-1440.43Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=... [more]
GPX6_HUMAN7.367e-1440.18Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 P... [more]
GPX8A_XENLA2.144e-1338.71Probable glutathione peroxidase 8-A OS=Xenopus lae... [more]
GPX3_CAEEL4.775e-1337.39Glutathione peroxidase OS=Caenorhabditis elegans G... [more]
GPX8_BOVIN1.815e-1236.84Probable glutathione peroxidase 8 OS=Bos taurus GN... [more]
GPX8_HUMAN3.095e-1234.74Probable glutathione peroxidase 8 OS=Homo sapiens ... [more]
GPX8_MOUSE6.896e-1233.68Probable glutathione peroxidase 8 OS=Mus musculus ... [more]
GPX3_RAT6.896e-1240.91Glutathione peroxidase 3 OS=Rattus norvegicus GN=G... [more]
GPX3_CEBAP6.896e-1240.00Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 P... [more]
GPX5_MACFA9.006e-1238.39Epididymal secretory glutathione peroxidase OS=Mac... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6243 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739853 ID=CK739853; Name=CK739853; organism=Citrus sinensis; type=EST; length=290bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGG
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