CK739853

Overview
NameCK739853
Unique NameCK739853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length290
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2542 contig Csv1_Contig2542:360..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX5_RAT (Epididymal secretory glutathione peroxidase OS=Rattus norvegicus GN=Gpx5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.422e-11
Identity = 46/110 (41.82%), Postives = 53/110 (48.18%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS----------KGGLFGDSIK-----WNFSKFLV 283
            Y EL+ L D  K  GL IL FPCNQFG QEPGDN +I       R    F   F +F K DVNG+    ++  LK S              F + IK     WNF KFLV
Sbjct:   79 YPELNALQDDLKQFGLVILGFPCNQFGKQEPGDNTEILPGLKYVRPGKGFLPNFQLFAKGDVNGEKEQEIFTFLKRSCPHPSETVVTSKHTFWEPIKVHDIRWNFEKFLV 188          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX1_MOUSE (Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.470e-11
Identity = 41/118 (34.75%), Postives = 59/118 (50.00%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSK-------------------GGLFGDSIKWNFSKFLV 283
            T  +YTE++ L  +   +GL +L FPCNQFG QE G NE+I       R    F+  F +F+K +VNG+ A PL+  L+++                      +  + I WNF KFLV
Sbjct:   50 TIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLV 167          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX5_MOUSE (Epididymal secretory glutathione peroxidase OS=Mus musculus GN=Gpx5 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.624e-11
Identity = 44/110 (40.00%), Postives = 54/110 (49.09%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN-EQIQEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLK---------------SSKGGLFGDSIKWNFSKFLV 283
            Y EL+ L +  K  GL IL FPCNQFG QEPGDN E +      R    F   F +F K DVNG+N   ++  LK               +S   +    I+WNF KFLV
Sbjct:   79 YPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSCPHPSETVVMSKHTSWEPIKVHDIRWNFEKFLV 188          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX5_PIG (Epididymal secretory glutathione peroxidase OS=Sus scrofa GN=GPX5 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 42/112 (37.50%), Postives = 56/112 (50.00%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLV 283
            + Y EL+ L ++ K  GL +L FPCNQFG QEPG+N +I       R    +   F +F+K DVNG+    ++  LK S      L G              I+WNF KFLV
Sbjct:   75 AQYPELNTLQEELKPFGLVVLGFPCNQFGKQEPGENSEILLGLKYVRPGGGYVPNFQLFEKGDVNGEKEQKVFTFLKHSCPHPSELIGSIGYISWEPIRVHDIRWNFEKFLV 186          
BLAST of CK739853 vs. ExPASy Swiss-Prot
Match: GPX3_MOUSE (Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 44/110 (40.00%), Postives = 55/110 (50.00%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLV 283
            Y EL+ L ++    GL IL FP NQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+          S G LF +      I+WNF KFLV
Sbjct:   79 YLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLV 188          
The following BLAST results are available for this feature:
BLAST of CK739853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GPX5_RAT3.422e-1141.82Epididymal secretory glutathione peroxidase OS=Rat... [more]
GPX1_MOUSE4.470e-1134.75Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 P... [more]
GPX5_MOUSE7.624e-1140.00Epididymal secretory glutathione peroxidase OS=Mus... [more]
GPX5_PIG9.957e-1137.50Epididymal secretory glutathione peroxidase OS=Sus... [more]
GPX3_MOUSE9.957e-1140.00Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6243 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739853 ID=CK739853; Name=CK739853; organism=Citrus sinensis; type=EST; length=290bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGG
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