CK739854

Overview
NameCK739854
Unique NameCK739854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.670e-28
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 1.670e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.762e-28
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.301e-28
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.832e-28
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 2.832e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.832e-28
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 2.832e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.687e-28
Identity = 62/70 (88.57%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   L+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 3.687e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
The following BLAST results are available for this feature:
BLAST of CK739854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_NEUCR1.670e-2890.00Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_ACECL1.762e-2888.57Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_ACACA2.301e-2890.00Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY2.832e-2888.57Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL2.832e-2888.57Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_EUPEU3.687e-2888.57Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_TRYBB3.926e-2888.57Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_AGLNE3.926e-2888.57Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA4.801e-2888.57Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR4.801e-2888.57Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6245 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739854 ID=CK739854; Name=CK739854; organism=Citrus sinensis; type=EST; length=421bp
GAAGATGGAAGGACTCTTGCAGACTATAACATCCAGAAAGAATCCACTCT
TCACTTGGTTCTTCGCCTCCGTGGTGGTATGCAGATTTTTGTGAAGACAC
TCACCTGGGAAAACCATCACCGTTGGAGGTTGAGAGTTCGGACACAATTG
ACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAG
CAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGC
TGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCGACTCC
GTGGAGGTTTCTGAGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCT
TCGGTTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAATAGCTTAAAT
AACTATTTGAAGTTTATTTTG
back to top