CK739854 | Citrus Genome Database

Overview


Name	CK739854
Unique Name	CK739854
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	421

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK739854_ssr329	microsatellite	CK739854_ssr329:329..340.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9569	contig	Csv1_Contig9569:1122..1540.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3

Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1

Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9

BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3

Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1

Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9

BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3

Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1

Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9

BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3

Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1

Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9

BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3

Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1

Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9

BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3

Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1

Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9

BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3

Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1

Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9

BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3

Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1

Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9

BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3

Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1

Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9

BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3

Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1

Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9

The following BLAST results are available for this feature:

BLAST of CK739854 vs. ExPASy Swiss-Prot

BLAST of CK739854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_RAT	4.801e-28	88.57	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]
UBIQ_RABIT	4.801e-28	88.57	Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1	[more]
UBIQ_PONPY	4.801e-28	88.57	Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2	[more]
UBIQ_PLUXY	4.801e-28	88.57	Ubiquitin OS=Plutella xylostella PE=3 SV=1	[more]
UBIQ_PIG	4.801e-28	88.57	Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1	[more]
UBIQ_PANTR	4.801e-28	88.57	Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2	[more]
UBIQ_OPHHA	4.801e-28	88.57	Ubiquitin OS=Ophiophagus hannah PE=3 SV=1	[more]
UBIQ_MOUSE	4.801e-28	88.57	Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1	[more]
UBIQ_MANSE	4.801e-28	88.57	Ubiquitin OS=Manduca sexta PE=3 SV=1	[more]
UBIQ_MACFA	4.801e-28	88.57	Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6245 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739854 ID=CK739854; Name=CK739854; organism=Citrus sinensis; type=EST; length=421bp
GAAGATGGAAGGACTCTTGCAGACTATAACATCCAGAAAGAATCCACTCT
TCACTTGGTTCTTCGCCTCCGTGGTGGTATGCAGATTTTTGTGAAGACAC
TCACCTGGGAAAACCATCACCGTTGGAGGTTGAGAGTTCGGACACAATTG
ACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAG
CAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGC
TGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCGACTCC
GTGGAGGTTTCTGAGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCT
TCGGTTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAATAGCTTAAAT
AACTATTTGAAGTTTATTTTG