CK739854

Overview
NameCK739854
Unique NameCK739854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.801e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 4.801e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.251e-28
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   L+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 6.251e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.251e-28
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 311
            T  GK   LEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG+
Sbjct:    7 TLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGY 77

HSP 2 Score: 21.1718 bits (43), Expect = 6.251e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 8.139e-28
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 8.139e-28
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.060e-27
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   L+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 1.060e-27
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.380e-27
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 1.380e-27
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.380e-27
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 21.1718 bits (43), Expect = 1.380e-27
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CK739854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_CANFA4.801e-2888.57Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR4.801e-2888.57Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN4.801e-2888.57Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_TETPY6.251e-2887.14Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_ENCCU6.251e-2885.92Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_SHEEP8.139e-2887.14Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_EIMBO1.060e-2787.14Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_STRPU1.380e-2787.14Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_DICDI1.380e-2787.14Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_LEIMA1.492e-2787.14Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6245 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739854 ID=CK739854; Name=CK739854; organism=Citrus sinensis; type=EST; length=421bp
GAAGATGGAAGGACTCTTGCAGACTATAACATCCAGAAAGAATCCACTCT
TCACTTGGTTCTTCGCCTCCGTGGTGGTATGCAGATTTTTGTGAAGACAC
TCACCTGGGAAAACCATCACCGTTGGAGGTTGAGAGTTCGGACACAATTG
ACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAG
CAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGC
TGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCGACTCC
GTGGAGGTTTCTGAGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCT
TCGGTTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAATAGCTTAAAT
AACTATTTGAAGTTTATTTTG
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