CK739854

Overview
NameCK739854
Unique NameCK739854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.965e-27
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 3
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   L+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 21.1718 bits (43), Expect = 3.965e-27
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9          
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.261e-26
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  G    LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 21.1718 bits (43), Expect = 4.261e-26
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9          
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.069e-25
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 3
Query:  123 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 302
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    4 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.261e-22
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 3
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   +E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    7 TLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          

HSP 2 Score: 21.1718 bits (43), Expect = 7.261e-22
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:   79 MQIFVKTLT 105
            MQIFVKTLT
Sbjct:    1 MQIFVKTLT 9          
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.086e-21
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 3
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 311
            T  GK    E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG+
Sbjct:    7 TLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGGY 77          
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.683e-18
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 3
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 311
            T  GK   +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGGF
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 77          
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.282e-18
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 3
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 311
            T  GK   +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    7 TLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77          
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.204e-18
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 3
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 311
            T  GK   +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77          
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 3
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.118e-17
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 311
            T  GK   L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGGF
Sbjct:    7 TLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGGF 77          
The following BLAST results are available for this feature:
BLAST of CK739854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_PHYIN3.965e-2785.71Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_LEITA4.261e-2684.29Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE1.069e-2595.00Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP7.261e-2271.43Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC2.086e-2167.61Ubiquitin-like protein OS=Autographa californica n... [more]
RUB1_ARATH3.683e-1859.15NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RUB1_DESAN6.282e-1859.15NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB1_ORYSJ8.204e-1857.75NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB2_ORYSJ1.828e-1758.57NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
NEDD8_CAEEL3.118e-1756.34NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6245 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739854 ID=CK739854; Name=CK739854; organism=Citrus sinensis; type=EST; length=421bp
GAAGATGGAAGGACTCTTGCAGACTATAACATCCAGAAAGAATCCACTCT
TCACTTGGTTCTTCGCCTCCGTGGTGGTATGCAGATTTTTGTGAAGACAC
TCACCTGGGAAAACCATCACCGTTGGAGGTTGAGAGTTCGGACACAATTG
ACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAG
CAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGC
TGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCGACTCC
GTGGAGGTTTCTGAGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCT
TCGGTTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAATAGCTTAAAT
AACTATTTGAAGTTTATTTTG
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