CK739854

Overview
NameCK739854
Unique NameCK739854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    7 TLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
[Close]
BLAST of CK739854 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 3 
Query:   99 THLGKPSPLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 308
            T  GK   +E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    7 TLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76
The following BLAST results are available for this feature:
BLAST of CK739854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBL1_SCHPO7.187e-1447.14Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST1.770e-1248.57NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6245 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739854 ID=CK739854; Name=CK739854; organism=Citrus sinensis; type=EST; length=421bp
GAAGATGGAAGGACTCTTGCAGACTATAACATCCAGAAAGAATCCACTCT
TCACTTGGTTCTTCGCCTCCGTGGTGGTATGCAGATTTTTGTGAAGACAC
TCACCTGGGAAAACCATCACCGTTGGAGGTTGAGAGTTCGGACACAATTG
ACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAG
CAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGC
TGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCGACTCC
GTGGAGGTTTCTGAGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCT
TCGGTTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAATAGCTTAAAT
AACTATTTGAAGTTTATTTTG
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