CK739855

Overview
NameCK739855
Unique NameCK739855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.805e-42
Identity = 95/177 (53.67%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVS-CFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D+A L P  GTL++FTNE GG  DD ++T   + ++Y+V NAGC DKDLA ++  ++     G DVS  + D  +LLALQGP A  VLQ    DDL KL F    ++++ GVS C +TR GYTGEDG EISVP+  AV LA A+LE  E  V+L GL ARDSLRLEAGLCLYG+D++
Sbjct:  105 DIAELRPNQGTLSLFTNEAGGIEDDLIVTSTSEGYLYVVSNAGCWDKDLALMQGKVRELQNMGSDVSLEVVD-NALLALQGPTATQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPAAAAVRLAAALLENPE--VKLAGLAARDSLRLEAGLCLYGSDID 278          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_DICDI (Aminomethyltransferase, mitochondrial OS=Dictyostelium discoideum GN=gcvT PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.405e-41
Identity = 92/182 (50.55%), Postives = 121/182 (66.48%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGG--DVSWHIHDERSLLALQGPLAAPVLQHLTKD-DLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKS----EGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            D+  L  G   L+VFTNE GG IDD++IT   D  +Y+VVNAGC DKD++HI   +K F +     DVS  + ++ SL+A+QGP    +LQ   KD D++ + F   R + I G+ C +TR GYTGEDGFEISVPS++AV LA+  L  S    E  ++  GLGARDSLRLEAGLCLYG+D+
Sbjct:   96 DLQALPTGHSKLSVFTNEKGGIIDDTMITNAGDS-LYVVVNAGCADKDISHINEKIKEFKSVNPTHDVSMQLLEDLSLIAIQGPTTESILQKFVKDQDITNMEFMTQRPMTIAGIDCIVTRCGYTGEDGFEISVPSKQAVRLAELFLATSNASIESGIKPAGLGARDSLRLEAGLCLYGHDL 276          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_CHICK (Aminomethyltransferase, mitochondrial OS=Gallus gallus GN=AMT PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 3.764e-40
Identity = 92/177 (51.98%), Postives = 114/177 (64.41%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGV-SCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D+A L PG GTLT+ TNE G  +DD ++T   +DH+Y+V NAGC DKD A +E       A GGDV   +  +R+   +QGP  A VLQ    DDL+KL F       + GV  C +TR GYTGEDG EISVP+ RAV+LA+ +L   E  V   GL ARDSLRLEAGLCLYGND++
Sbjct:   94 DIAELRPGQGTLTLLTNERGDIVDDLIVTNTAEDHLYVVSNAGCADKDRAVMEGRAAELRAAGGDVHLEVSGQRA-AGVQGPSMAQVLQAGLPDDLTKLTFMTSTATTVFGVPGCRVTRCGYTGEDGVEISVPAGRAVELAERLLGCPE--VWPAGLAARDSLRLEAGLCLYGNDID 267          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SCHPO (Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=gcv1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.087e-37
Identity = 82/173 (47.40%), Postives = 118/173 (68.21%), Query Frame = 3
Query:   15 LAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKD-DLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            L P   TL+ FTNE GG IDD++I+K  ++  Y+V NA C +KD A+++ H++++  KG  V       R+L+A+QGP  A V+Q L  + D S L FG+   +D  GV C  +R+GYTGEDGFE+S+P E +VD A  +L  ++ +VR  GLGARD+LRLEAG+CLYG+D++
Sbjct:   99 LKPFHSTLSAFTNETGGIIDDTIISKQDENTYYIVTNAACSEKDEANLKKHIENW--KG--VELERVQGRALIAIQGPETASVVQKLIPNVDFSVLKFGQSAYVDFKGVKCLFSRSGYTGEDGFEVSIPEEVSVDFASTLL--ADTRVRPIGLGARDTLRLEAGMCLYGSDID 265          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YEAST (Aminomethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=GCV1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.889e-32
Identity = 82/185 (44.32%), Postives = 115/185 (62.16%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDH-IYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTK-----DDLSKLYFG---EFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D   L  G+GTL+V  N  GG +DD++ITK  DD+  Y+V NAGC ++D       +++ +    D  W I + RSLLALQGP A  VL+ L        DL +L+FG   EF + D  G    + R GYTGEDGFEIS+ +E+AV+ A+ +L  +   ++  GL ARDSLRLEAG+CLYG++++
Sbjct:   89 DFNALPVGSGTLSVLLNPQGGVVDDTIITKENDDNEFYIVTNAGCAERDTEFFHDELQNGSTL--DCQWKIIEGRSLLALQGPKAKDVLEPLLSKTAPGKDLKELFFGQRHEFALKD--GSLVQIARGGYTGEDGFEISIANEKAVEFAEQLL--ANPVMKPIGLAARDSLRLEAGMCLYGHELD 267          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_ANOFW (Aminomethyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.753e-29
Identity = 85/179 (47.49%), Postives = 109/179 (60.89%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR-ILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE--KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DVA L  G    T+   E+GG++DD ++ K  DDH  LVVNA   +KD A +  H+       GDV   +I ++ + LALQGPLA  VLQ LT  DLS + F  F   +D+ GV   ++RTGYTGEDGFE+   +E A  L +AILE  K EG V   GLGARD+LR EA L LYG ++
Sbjct:   73 DVAKLTDGRAQYTLMCYEDGGTVDDLLVYKKADDHYLLVVNAANIEKDFAWLSEHVV------GDVELVNISNDIAQLALQGPLAEKVLQQLTTVDLSTMKFFAFADHVDVAGVQTLVSRTGYTGEDGFELYCRAEDAPTLWRAILEAGKEEG-VLPCGLGARDTLRFEACLPLYGQEL 244          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_THEPX (Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.289e-29
Identity = 76/177 (42.94%), Postives = 111/177 (62.71%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            D++ L       T   N NGG +DD ++ K  D+H YLVVNA   +KD   ++ +   +  +  ++S    DE + LA+QGP A  +LQ LT  DLS++ F  F+  + I G+ C ++RTGYTGEDGFEI +P++ AV+L + I+E   E  ++  GLGARD+LR EAGL LYGN++
Sbjct:   75 DLSKLKGNQVLYTFMCNYNGGVVDDLLVYKYSDEHFYLVVNAANIEKDYKWMKDNKGVYEVEIENIS----DEVAELAIQGPKAEEILQKLTDTDLSEIKFFCFKDNVKIAGIECLVSRTGYTGEDGFEIYMPNKYAVELWEKIVEVGKEYGLKPAGLGARDTLRFEAGLPLYGNEL 247          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_THEP3 (Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.904e-29
Identity = 76/177 (42.94%), Postives = 110/177 (62.15%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            D++ L       T   N NGG +DD ++ K  D+H  LVVNA   +KD   ++ +   +  +  ++S    DE S LA+QGP A  +LQ LT  DLS++ F  F+  + I G+ C ++RTGYTGEDGFEI +P++ AV+L + I+E   E  ++  GLGARD+LR EAGL LYGN++
Sbjct:   75 DLSKLKDNQVFYTFMCNYNGGVVDDLLVYKYSDEHFLLVVNAANIEKDYKWMKDNKGVYEVEINNIS----DEISELAVQGPKAEEILQKLTYTDLSEIKFFYFKDNVKIAGIECLVSRTGYTGEDGFEIYMPNKYAVELWEKIIEVGKEYGLKPAGLGARDTLRFEAGLPLYGNEL 247          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_GEOSW (Aminomethyltransferase OS=Geobacillus sp. (strain WCH70) GN=gcvT PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 85/179 (47.49%), Postives = 108/179 (60.34%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE--KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    ++   E+GG++DD +I K  D H  LVVNA   +KD   +  H+       GDV   +I  E + LALQGPLA  VLQ LT  DLS + F  F+  ++INGV   ++RTGYTGEDGFEI    E AV L ++ILE  K EG V   GLGARD+LR EA L LYG ++
Sbjct:   73 DVSKLTDGRVQYSLMCYEDGGTVDDLLIYKKADGHYLLVVNAANIEKDFEWLHGHLF------GDVELVNISQEIAQLALQGPLAEQVLQKLTNTDLSAIKFFSFQDDININGVKALVSRTGYTGEDGFEIYCRREDAVALWESILEAGKEEG-VLPCGLGARDTLRFEATLPLYGQEL 244          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_THEMA (Aminomethyltransferase OS=Thermotoga maritima GN=gcvT PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 75/179 (41.90%), Postives = 102/179 (56.98%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAV---DLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +  ++S    D  +L+A QGP A   LQ L +D L ++ +  FR   + GV   ++RTGYTGEDGFE+ + ++ A    D    +L K +G  R  GLGARD  RLEA   LYG DM+
Sbjct:   72 DFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFDVEVSNIS----DTTALIAFQGPKAQETLQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNLLRKIDG--RPAGLGARDVCRLEATYLLYGQDMD 244          
The following BLAST results are available for this feature:
BLAST of CK739855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_CANFA1.805e-4253.67Aminomethyltransferase, mitochondrial OS=Canis fam... [more]
GCST_DICDI3.405e-4150.55Aminomethyltransferase, mitochondrial OS=Dictyoste... [more]
GCST_CHICK3.764e-4051.98Aminomethyltransferase, mitochondrial OS=Gallus ga... [more]
GCST_SCHPO5.087e-3747.40Probable aminomethyltransferase, mitochondrial OS=... [more]
GCST_YEAST2.889e-3244.32Aminomethyltransferase, mitochondrial OS=Saccharom... [more]
GCST_ANOFW1.753e-2947.49Aminomethyltransferase OS=Anoxybacillus flavitherm... [more]
GCST_THEPX2.289e-2942.94Aminomethyltransferase OS=Thermoanaerobacter sp. (... [more]
GCST_THEP33.904e-2942.94Aminomethyltransferase OS=Thermoanaerobacter pseud... [more]
GCST_GEOSW6.660e-2947.49Aminomethyltransferase OS=Geobacillus sp. (strain ... [more]
GCST_THEMA1.136e-2841.90Aminomethyltransferase OS=Thermotoga maritima GN=g... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739855 ID=CK739855; Name=CK739855; organism=Citrus sinensis; type=EST; length=531bp
CTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTACA
AATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGGTGAAGGA
TGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTTG
CTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGTC
TCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCCT
TGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTAT
ACTTCGGGGAATTCCGAATTTTGGATATCAATGGTGTATCCTGCTTTCTC
ACTAGGACAGGGTACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATC
TGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAAATCTGAAGGAA
AGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCT
GGCTTATGTTTATATGGTAATGACATGGAAC
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