CK739855

Overview
NameCK739855
Unique NameCK739855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_DESRM (Aminomethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.437e-23
Identity = 66/176 (37.50%), Postives = 99/176 (56.25%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEK-SEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            D++ L PG    +   N  GG++DD ++ +++D    LVVNA   DKD   I +        G ++  ++ +    LALQGP A  +LQ LT  DLS +    F    + G+ C ++RTGYTGE GFE+  P+  A  + +AI+   +   +R  GLGARD+LR EA L LYG+++
Sbjct:   75 DISRLKPGCAIYSPMCNPQGGTVDDLLVYQLEDQQYLLVVNASNTDKDFHWIVSQQ----VPGVEIQ-NVSEVTCQLALQGPQAEKILQRLTAVDLSHIKSFCFVYGAVEGIHCLISRTGYTGEAGFELYFPASHAERVWQAIMATGATDGLRPVGLGARDTLRFEACLALYGHEL 245          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_XANOR (Aminomethyltransferase OS=Xanthomonas oryzae pv. oryzae GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 76/176 (43.18%), Postives = 96/176 (54.55%), Query Frame = 3
Query:   24 GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA-APVLQHLTKDDL---SKLYFGEFRILDI---NGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I      F     DV      + +++A+QGP A A V+  L   D    SKL  G F  L     +G+  FL RTGYTGEDGFEI +P E AV    A+L +    V+  GLGARD+LRLEAG+ LYG DM+
Sbjct:   81 GKALYTCMLNPQGGVIDDLIVYYMSEDFFRLVVNAATREKDLQWIGEQAVRF-----DVRVEERSDFAMIAVQGPNARANVIDLLDPADTAAASKL--GRFAALQTRSRDGIELFLARTGYTGEDGFEIVLPQEAAVAFWNALLAQG---VKPAGLGARDTLRLEAGMHLYGQDMD 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_XANOP (Aminomethyltransferase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 76/176 (43.18%), Postives = 96/176 (54.55%), Query Frame = 3
Query:   24 GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA-APVLQHLTKDDL---SKLYFGEFRILDI---NGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I      F     DV      + +++A+QGP A A V+  L   D    SKL  G F  L     +G+  FL RTGYTGEDGFEI +P E AV    A+L +    V+  GLGARD+LRLEAG+ LYG DM+
Sbjct:   81 GKALYTCMLNPQGGVIDDLIVYYMSEDFFRLVVNAATREKDLQWIGEQAVRF-----DVRVEERSDFAMIAVQGPNARANVIDLLDPADTAAASKL--GRFAALQTRSRDGIELFLARTGYTGEDGFEIVLPQEAAVAFWNALLAQG---VKPAGLGARDTLRLEAGMHLYGQDMD 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_XANOM (Aminomethyltransferase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 76/176 (43.18%), Postives = 96/176 (54.55%), Query Frame = 3
Query:   24 GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA-APVLQHLTKDDL---SKLYFGEFRILDI---NGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I      F     DV      + +++A+QGP A A V+  L   D    SKL  G F  L     +G+  FL RTGYTGEDGFEI +P E AV    A+L +    V+  GLGARD+LRLEAG+ LYG DM+
Sbjct:   81 GKALYTCMLNPQGGVIDDLIVYYMSEDFFRLVVNAATREKDLQWIGEQAVRF-----DVRVEERSDFAMIAVQGPNARANVIDLLDPADTAAASKL--GRFAALQTRSRDGIELFLARTGYTGEDGFEIVLPQEAAVAFWNALLAQG---VKPAGLGARDTLRLEAGMHLYGQDMD 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SALPC (Aminomethyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 67/177 (37.85%), Postives = 99/177 (55.93%), Query Frame = 3
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +     D++  + D+ SL+A+QGP A      L  D+      G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYAI---DIT--VRDDLSLIAVQGPNAQEKAATLFTDEQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SALNS (Aminomethyltransferase OS=Salmonella newport (strain SL254) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 67/177 (37.85%), Postives = 99/177 (55.93%), Query Frame = 3
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +     D++  + D+ SL+A+QGP A      L  D+      G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYAI---DIT--VRDDLSLIAVQGPNAQEKAATLFTDEQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SALHS (Aminomethyltransferase OS=Salmonella heidelberg (strain SL476) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 67/177 (37.85%), Postives = 99/177 (55.93%), Query Frame = 3
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +     D++  + D+ SL+A+QGP A      L  D+      G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYAI---DIT--VRDDLSLIAVQGPNAQEKAATLFTDEQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SALCH (Aminomethyltransferase OS=Salmonella choleraesuis GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 67/177 (37.85%), Postives = 99/177 (55.93%), Query Frame = 3
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +     D++  + D+ SL+A+QGP A      L  D+      G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYAI---DIT--VRDDLSLIAVQGPNAQEKAATLFTDEQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SALAR (Aminomethyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 67/177 (37.85%), Postives = 99/177 (55.93%), Query Frame = 3
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDLA I  H + +     D++  + D+ SL+A+QGP A      L  ++      G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLAWITQHAEPYAI---DIT--VRDDLSLIAVQGPNAQEKAATLFTEEQRNAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_ECOLU (Aminomethyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 66/177 (37.29%), Postives = 97/177 (54.80%), Query Frame = 3
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A      L  D   +   G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKSGKALYSGMLNASGGVIDDLIVYYFSEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241          
The following BLAST results are available for this feature:
BLAST of CK739855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_DESRM1.437e-2337.50Aminomethyltransferase OS=Desulfotomaculum reducen... [more]
GCST_XANOR1.877e-2343.18Aminomethyltransferase OS=Xanthomonas oryzae pv. o... [more]
GCST_XANOP1.877e-2343.18Aminomethyltransferase OS=Xanthomonas oryzae pv. o... [more]
GCST_XANOM1.877e-2343.18Aminomethyltransferase OS=Xanthomonas oryzae pv. o... [more]
GCST_SALPC1.877e-2337.85Aminomethyltransferase OS=Salmonella paratyphi C (... [more]
GCST_SALNS1.877e-2337.85Aminomethyltransferase OS=Salmonella newport (stra... [more]
GCST_SALHS1.877e-2337.85Aminomethyltransferase OS=Salmonella heidelberg (s... [more]
GCST_SALCH1.877e-2337.85Aminomethyltransferase OS=Salmonella choleraesuis ... [more]
GCST_SALAR1.877e-2337.85Aminomethyltransferase OS=Salmonella arizonae (str... [more]
GCST_ECOLU1.877e-2337.29Aminomethyltransferase OS=Escherichia coli O17:K52... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739855 ID=CK739855; Name=CK739855; organism=Citrus sinensis; type=EST; length=531bp
CTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTACA
AATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGGTGAAGGA
TGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTTG
CTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGTC
TCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCCT
TGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTAT
ACTTCGGGGAATTCCGAATTTTGGATATCAATGGTGTATCCTGCTTTCTC
ACTAGGACAGGGTACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATC
TGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAAATCTGAAGGAA
AGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCT
GGCTTATGTTTATATGGTAATGACATGGAAC
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