CK739855

Overview
NameCK739855
Unique NameCK739855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_ECOHS (Aminomethyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 66/177 (37.29%), Postives = 97/177 (54.80%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A      L  D   +   G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_ECOBW (Aminomethyltransferase OS=Escherichia coli (strain K12 / BW2952) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 66/177 (37.29%), Postives = 97/177 (54.80%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A      L  D   +   G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_ECO8A (Aminomethyltransferase OS=Escherichia coli O8 (strain IAI1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 66/177 (37.29%), Postives = 97/177 (54.80%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A      L  D   +   G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_ECO55 (Aminomethyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 66/177 (37.29%), Postives = 97/177 (54.80%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A      L  D   +   G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_ECO24 (Aminomethyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 66/177 (37.29%), Postives = 97/177 (54.80%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A      L  D   +   G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SHIF8 (Aminomethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=gcvT PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.201e-23
Identity = 66/177 (37.29%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A      L  D   ++  G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQVVEGMKPFFGVQVGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SALTY (Aminomethyltransferase OS=Salmonella typhimurium GN=gcvT PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.201e-23
Identity = 67/177 (37.85%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +     D++  + D+ SL+A+QGP A      L  D       G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYAI---DIT--VRDDLSLIAVQGPNAQEKAATLFTDQQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SALTI (Aminomethyltransferase OS=Salmonella typhi GN=gcvT PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.201e-23
Identity = 67/177 (37.85%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +     D++  + D+ SL+A+QGP A      L  D       G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYAI---DIT--VRDDLSLIAVQGPNAQEKAATLFTDQQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SALSV (Aminomethyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=gcvT PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.201e-23
Identity = 67/177 (37.85%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +     D++  + D+ SL+A+QGP A      L  D       G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYAI---DIT--VRDDLSLIAVQGPNAQEKAATLFTDQQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SALPK (Aminomethyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=gcvT PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.201e-23
Identity = 67/177 (37.85%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +     D++  + D+ SL+A+QGP A      L  D       G      +     F+  TGYTGE G+EI++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYAI---DIT--VRDDLSLIAVQGPNAQEKAATLFTDQQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMD 241
The following BLAST results are available for this feature:
BLAST of CK739855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_ECOHS2.451e-2337.29Aminomethyltransferase OS=Escherichia coli O9:H4 (... [more]
GCST_ECOBW2.451e-2337.29Aminomethyltransferase OS=Escherichia coli (strain... [more]
GCST_ECO8A2.451e-2337.29Aminomethyltransferase OS=Escherichia coli O8 (str... [more]
GCST_ECO552.451e-2337.29Aminomethyltransferase OS=Escherichia coli (strain... [more]
GCST_ECO242.451e-2337.29Aminomethyltransferase OS=Escherichia coli O139:H2... [more]
GCST_SHIF83.201e-2337.29Aminomethyltransferase OS=Shigella flexneri seroty... [more]
GCST_SALTY3.201e-2337.85Aminomethyltransferase OS=Salmonella typhimurium G... [more]
GCST_SALTI3.201e-2337.85Aminomethyltransferase OS=Salmonella typhi GN=gcvT... [more]
GCST_SALSV3.201e-2337.85Aminomethyltransferase OS=Salmonella schwarzengrun... [more]
GCST_SALPK3.201e-2337.85Aminomethyltransferase OS=Salmonella paratyphi A (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739855 ID=CK739855; Name=CK739855; organism=Citrus sinensis; type=EST; length=531bp
CTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTACA
AATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGGTGAAGGA
TGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTTG
CTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGTC
TCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCCT
TGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTAT
ACTTCGGGGAATTCCGAATTTTGGATATCAATGGTGTATCCTGCTTTCTC
ACTAGGACAGGGTACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATC
TGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAAATCTGAAGGAA
AGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCT
GGCTTATGTTTATATGGTAATGACATGGAAC
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