CK739855

Overview
NameCK739855
Unique NameCK739855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_CLOBM (Aminomethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.484e-28
Identity = 77/167 (46.11%), Postives = 101/167 (60.48%), Query Frame = 3
Query:   39 TVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEF-RILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE--KSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS    D  + LALQGPLA  +LQ +   DL ++ F +  R + ++G  C ++RTGYTGEDGFEI    E A  L  AIL   K EG  +  GLGARD+LR EA L LYGN+M+
Sbjct:   87 TFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWIMDHKGDFDVEIADVS----DSIAQLALQGPLAEEILQKIVDVDLQEIKFFKLRRDVLVDGKKCLVSRTGYTGEDGFEIYCKPEDAKGLWHAILNAGKEEG-AQPIGLGARDTLRFEASLLLYGNEMD 248          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_ALKMQ (Aminomethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=gcvT PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.484e-28
Identity = 77/160 (48.12%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   54 ENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEF-RILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            ENGG +DD ++ K ++D+ YLV+NAG  +KD    E  +K  TA   +V+ +I ++ S LALQGP A  +LQ LT+ DLS+L F    R + I+GV+C ++RTGYTGEDGFEI V    AV L + +LE   E  ++  GLGARD+LR EA L LYG+++
Sbjct:   92 ENGGVVDDLLVYKFEEDYFYLVINAGNIEKDY---EWMLKQSTAYDVEVN-NISNDVSELALQGPKAEKILQKLTETDLSQLQFFYLQRDVTIDGVNCLISRTGYTGEDGFEIYVNPSDAVQLWEKLLEVGQEDGLKPIGLGARDTLRFEAALPLYGHEI 247          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_CLOB1 (Aminomethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.531e-28
Identity = 77/167 (46.11%), Postives = 100/167 (59.88%), Query Frame = 3
Query:   39 TVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEF-RILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE--KSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS    D  + LA QGPLA  +LQ +   DL ++ F +  R + +NG  C ++RTGYTGEDGFEI    E A  L  AIL   K EG  +  GLGARD+LR EA L LYGN+M+
Sbjct:   87 TFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWIMDHKGDFDVEIVDVS----DSIAQLAFQGPLAEEILQKIVDVDLQEIKFFKLKRDVLVNGKKCLVSRTGYTGEDGFEIYCKPEDAKGLWHAILNAGKEEG-AQPIGLGARDTLRFEASLLLYGNEMD 248          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_CLOB6 (Aminomethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.305e-28
Identity = 77/167 (46.11%), Postives = 100/167 (59.88%), Query Frame = 3
Query:   39 TVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEF-RILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE--KSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS    D  + LA QGPLA  +LQ +   DL ++ F +  R + +NG  C ++RTGYTGEDGFEI    E A  L  AIL   K EG  +  GLGARD+LR EA L LYGN+M+
Sbjct:   87 TFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWILDHKGDFDVEIVDVS----DSIAQLAFQGPLAEEILQKIVDVDLQEIKFFKLKRDVLVNGKKCLVSRTGYTGEDGFEIYCKPEDAKGLWHAILNAGKEEG-AQPIGLGARDTLRFEASLLLYGNEMD 248          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_THESQ (Aminomethyltransferase OS=Thermotoga sp. (strain RQ2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 73/177 (41.24%), Postives = 100/177 (56.50%), Query Frame = 3
Query:    9 AGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVP---SERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +  ++S    D  +L+A QGP A   LQ L +D L ++ +  F+   + GV   ++RTGYTGEDGFE+ +    S +  D    +L K +G  R  GLGARD  RLEA   LYG DM+
Sbjct:   74 SSLPDGKALYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFNVEVSNIS----DTTALIAFQGPRAQEALQELVEDSLEEIAYYSFKKSIVAGVEAIVSRTGYTGEDGFELMIEAKNSPKVWDALMNLLRKIDG--RPAGLGARDVCRLEATYLLYGQDMD 244          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_CLOBJ (Aminomethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 76/167 (45.51%), Postives = 101/167 (60.48%), Query Frame = 3
Query:   39 TVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEF-RILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE--KSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS    D  + LA QGPLA  +LQ +   DL ++ F +  R + ++G  C ++RTGYTGEDGFEI    E A +L  AIL   K EG  +  GLGARD+LR EA L LYGN+M+
Sbjct:   87 TFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWIMDHKGDFDVEIVDVS----DSIAQLAFQGPLAEEILQKIVDVDLQEIKFFKLKRDVLVDGKKCLVSRTGYTGEDGFEIYCKPEDAKELWHAILNAGKEEG-AQPIGLGARDTLRFEASLLLYGNEMD 248          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_THEP1 (Aminomethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=gcvT PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 75/179 (41.90%), Postives = 102/179 (56.98%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAV---DLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +  ++S    D  +L+A QGP A   LQ L +D L ++ +  FR   + GV   ++RTGYTGEDGFE+ + ++ A    D    +L K +G  R  GLGARD  RLEA   LYG DM+
Sbjct:   72 DFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFDVEILNIS----DTTALIAFQGPEAQETLQELVEDSLEEIAYYSFRKSIVAGVEALVSRTGYTGEDGFELMLEAKDAPKVWDALMNLLRKIDG--RPAGLGARDVCRLEATYLLYGQDMD 244          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_CLOBK (Aminomethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 77/167 (46.11%), Postives = 101/167 (60.48%), Query Frame = 3
Query:   39 TVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEF-RILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE--KSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            T   NE+GG IDD ++ K  ++  +LV+NA  +DKD+  I  H   F  +  D S    D  + LALQGPLA  +LQ +   DL ++ F +  R + +NG  C ++RTGYTGEDGFEI    E A  L  AIL   K EG V+  GLGARD+LR EA L LYGN+M+
Sbjct:   87 TFMCNEDGGVIDDLLVYKFAENEFFLVINASNKDKDVKWIMDHKGDFDVEIVDES----DSIAQLALQGPLAEEILQKIVDIDLQEIKFFKLKRDVLVNGKKCLVSRTGYTGEDGFEIYCKPEDAKGLWHAILNAGKEEG-VQPIGLGARDTLRFEASLLLYGNEMD 248          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_THETN (Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.617e-28
Identity = 76/177 (42.94%), Postives = 109/177 (61.58%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEG-KVRLTGLGARDSLRLEAGLCLYGNDM 527
            D++ L       T   N NGG IDD ++ K  +++  LVVNA   +KD   +  +   +  +  +VS    D+ + LA+QGP A  +LQ LT +DLS++ F  F+  + I GV C ++RTGYTGEDGFEI +P+E AV L + ILE  +   ++  GLGARD+LR EAGL LYGN++
Sbjct:   81 DLSKLNDNQVLYTFMCNHNGGVIDDLLVYKYSNNYYLLVVNAANIEKDYKWMLNNAGIYKVEIENVS----DKIAELAIQGPKAEEILQKLTDEDLSQIKFFYFKDKVKIAGVECLVSRTGYTGEDGFEIYMPNEHAVTLWEKILEAGKDYGLKPAGLGARDTLRFEAGLPLYGNEL 253          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_CLOBL (Aminomethyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gcvT PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.256e-27
Identity = 76/167 (45.51%), Postives = 99/167 (59.28%), Query Frame = 3
Query:   39 TVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEF-RILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE--KSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            T   NE+GG IDD ++ K   D  +LV+NA  +DKD+  I  H   F  +  DVS    D  + LA QGPLA  +LQ +   DL ++ F +  R + ++G  C ++RTGYTGEDGFEI    E A  L  AIL   K EG  +  GLGARD+LR EA L LYGN+M+
Sbjct:   87 TFMCNEDGGVIDDLLVYKFAGDEFFLVINASNKDKDVKWIMGHKGDFDVEIVDVS----DSIAQLAFQGPLAEEILQKIVDVDLQEIKFFKLKRDVLVDGKKCLVSRTGYTGEDGFEIYCKPEDAKGLWHAILNAGKEEG-AQPIGLGARDTLRFEASLLLYGNEMD 248          
The following BLAST results are available for this feature:
BLAST of CK739855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_CLOBM1.484e-2846.11Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_ALKMQ1.484e-2848.13Aminomethyltransferase OS=Alkaliphilus metalliredi... [more]
GCST_CLOB12.531e-2846.11Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_CLOB63.305e-2846.11Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_THESQ4.317e-2841.24Aminomethyltransferase OS=Thermotoga sp. (strain R... [more]
GCST_CLOBJ4.317e-2845.51Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_THEP15.638e-2841.90Aminomethyltransferase OS=Thermotoga petrophila (s... [more]
GCST_CLOBK5.638e-2846.11Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_THETN9.617e-2842.94Aminomethyltransferase OS=Thermoanaerobacter tengc... [more]
GCST_CLOBL1.256e-2745.51Aminomethyltransferase OS=Clostridium botulinum (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739855 ID=CK739855; Name=CK739855; organism=Citrus sinensis; type=EST; length=531bp
CTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTACA
AATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGGTGAAGGA
TGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTTG
CTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGTC
TCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCCT
TGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTAT
ACTTCGGGGAATTCCGAATTTTGGATATCAATGGTGTATCCTGCTTTCTC
ACTAGGACAGGGTACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATC
TGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAAATCTGAAGGAA
AGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCT
GGCTTATGTTTATATGGTAATGACATGGAAC
back to top