CK739855

Overview
NameCK739855
Unique NameCK739855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_HALS3 (Probable aminomethyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 57/183 (31.15%), Postives = 86/183 (46.99%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDH---IYLVVNAG----CRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DV+ L PG       T+++G  IDD+V+ +   D       V NAG      D+   H +AH    +        ++  +  ++A+QGP A  ++     D +  L   E   + + GV C +  TGYTGE G EI  P+    D A A+ +      +  GLGARD+LR+E G  L G D +
Sbjct:   74 DVSRLDPGDAQYAAITDDDGIMIDDTVVYRTPADWPGAFLFVPNAGHDAAAFDRWTDHRDAHDLDASVD------NVTTDYGMVAVQGPDAPDLVAARAGDGVHDLGRFEAATVGVAGVECLVANTGYTGEAGVEIVFPA----DGAGAVWDAIANDCQPCGLGARDTLRMEHGFLLSGQDFD 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_AERPE (Probable aminomethyltransferase OS=Aeropyrum pernix GN=gcvT PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.141e-12
Identity = 60/165 (36.36%), Postives = 89/165 (53.94%), Query Frame = 3
Query:   39 TVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDER-SLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFL-TRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGND 524
            T+  NE     DD +  ++ ++   +V NA   D  L +  +   S    G +VS     ER +LLALQGP AA V++ +   DL  L   +FR    I GV+ ++ +R+G+TGEDGFEI    E A  + KA +E      +  G+ ARD+LR+EAG  L G++
Sbjct:   87 TLALNEYARVKDDEMPYRLGEEEWLIVPNAAVADAMLEYFSSIASSM---GLNVSIRDLRERYALLALQGPGAARVMEEMGGGDLLDLKPLQFRENAGIAGVTAYIVSRSGWTGEDGFEIIAEVEAAKRIFKAAVEAG---AKPAGIAARDTLRIEAGFVLGGHE 245          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_FRAAA (Aminomethyltransferase OS=Frankia alni (strain ACN14a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.795e-11
Identity = 56/176 (31.82%), Postives = 78/176 (44.32%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEG-KVRLTGLGARDSLRLEAGLCLYGNDM 527
            D+  +APG    T+  N+ GG +DD +      + + LV NA    + +A + A      A  G      H    +LA+QGP AAP L           Y   F      G    + R+GYTGE G+E+    +    L  A+    EG      GLGARD+LR E G  L+G D+
Sbjct:   77 DLGRIAPGQAQYTLCCNDEGGVVDDLIAYLFSGERVLLVPNAANNAEVVARLAA-----AAPAGVSVTDRHTGFGVLAVQGP-AAPTLVAALGLPTDGAYM-SFVEAAWKGRPVIVCRSGYTGERGYELLPRWDDTPALWDALFAAGEGLGASPVGLGARDTLRTEMGYPLHGQDL 245          
The following BLAST results are available for this feature:
BLAST of CK739855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_HALS32.300e-1331.15Probable aminomethyltransferase OS=Halobacterium s... [more]
GCST_AERPE1.141e-1236.36Probable aminomethyltransferase OS=Aeropyrum perni... [more]
GCST_FRAAA4.795e-1131.82Aminomethyltransferase OS=Frankia alni (strain ACN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739855 ID=CK739855; Name=CK739855; organism=Citrus sinensis; type=EST; length=531bp
CTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTACA
AATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGGTGAAGGA
TGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTTG
CTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGTC
TCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCCT
TGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTAT
ACTTCGGGGAATTCCGAATTTTGGATATCAATGGTGTATCCTGCTTTCTC
ACTAGGACAGGGTACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATC
TGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAAATCTGAAGGAA
AGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCT
GGCTTATGTTTATATGGTAATGACATGGAAC
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