CK739855

Overview
NameCK739855
Unique NameCK739855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_THENN (Aminomethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=gcvT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.952e-25
Identity = 67/178 (37.64%), Postives = 100/178 (56.18%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKV--RLTGLGARDSLRLEAGLCLYGNDME 530
            D + +  G    TV  NE GG +DD V+ ++  +   +VVNA   +KD   I+ H K+F  +  +VS    DE +L+A QGP +   LQ +   DL  + +  F+   ++G    ++RTGYTGEDGFE+ + +E A  +   ++E + G V  +  GLGARD  RLEA   LYG DM+
Sbjct:   72 DFSAIPEGKAMYTVMCNETGGIVDDLVVYRISHEKAIMVVNAANIEKDYEWIKVHAKNFNVEVRNVS----DETALVAFQGPKSQETLQRVVDIDLEGIGYYSFQWGRLDGERVLVSRTGYTGEDGFELMMNAESAAKIWDTLVEIA-GNVDGKPAGLGARDVCRLEASYLLYGQDMD 244
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACA2 (Aminomethyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gcvT PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.300e-24
Identity = 77/178 (43.26%), Postives = 101/178 (56.74%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERSLLALQGPLAAPVLQHLTKDDLSKLY-FGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRL-TGLGARDSLRLEAGLCLYGNDM 527
            DVA L PG    T     +GG++DD +I +  +    LV+NA   +KD+A +  H +      GDV+  +  D  SLLA+QGP A  VL  LT+ DLS L  F      D+ G    L+RTGYTGEDGFE+   +E AV L K IL   E +  +  GLGARD+LR EA L LYG ++
Sbjct:   73 DVADLKPGNALYTAMCYPDGGTVDDLLIYQKSESCYLLVINASNIEKDIAWLTEHTE------GDVTLTNQSDGISLLAVQGPNAQSVLAKLTECDLSSLKPFTFIDKADVAGRQVLLSRTGYTGEDGFELYCRNEDAVHLFKEILAAGEHEGLVPCGLGARDTLRFEAKLALYGQEL 244
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_PHOLL (Aminomethyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=gcvT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.697e-24
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 3 
Query:    3 DVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D+A L   G    T   N +GG IDD ++  + +D   LVVN+  R+KDLA I  H+ ++      V   + D+ +L+A+QGP A   ++ L  D+  +   G      +     F+  TGYTGE G+E+++P E+A D  + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DIAKLTEKGKALYTGMLNASGGVIDDLIVYYLSNDFYRLVVNSATREKDLAWINEHVANYP-----VDIQVRDDLALIAVQGPDAQAKVESLLNDEQKQTIAGMKPFFGVQAGDLFIATTGYTGEAGYEVALPKEQAADFWQKLLSVG---VKPAGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_ERWCT (Aminomethyltransferase OS=Erwinia carotovora subsp. atroseptica GN=gcvT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.697e-24
Identity = 77/188 (40.96%), Postives = 108/188 (57.45%), Query Frame = 3 
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTK------DDLS-----KLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA IE H  +F   G D+     DE +L+A+QGP A   +Q L K      +D++     K +FG+           F+  TGYTGE G+EI++P+E+ VD  + +L      V+  GLGARD+LRLEAG+ LYG DM+
Sbjct:   73 DVAKLTQPGKALYTGMLNASGGVIDDLIVYFLTEDYFRLVVNSATREKDLAWIEQHAAAF---GVDI--RERDELALVAVQGPQAQEKVQGLLKAKGLSDEDVAAVASMKPFFGK------QAGDFFVATTGYTGEAGYEIALPNEQVVDFWQQLLAVG---VKPCGLGARDTLRLEAGMNLYGQDMD 246
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YERPY (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +   G      I     F+  TGYTGE G+EI++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YERPS (Aminomethyltransferase OS=Yersinia pseudotuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +   G      I     F+  TGYTGE G+EI++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YERPP (Aminomethyltransferase OS=Yersinia pestis (strain Pestoides F) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +   G      I     F+  TGYTGE G+EI++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YERPN (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +   G      I     F+  TGYTGE G+EI++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YERPG (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +   G      I     F+  TGYTGE G+EI++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YERPE (Aminomethyltransferase OS=Yersinia pestis GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 3 
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +   G      I     F+  TGYTGE G+EI++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241
The following BLAST results are available for this feature:
BLAST of CK739855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_THENN9.952e-2537.64Aminomethyltransferase OS=Thermotoga neapolitana (... [more]
GCST_BACA21.300e-2443.26Aminomethyltransferase OS=Bacillus amyloliquefacie... [more]
GCST_PHOLL1.697e-2436.72Aminomethyltransferase OS=Photorhabdus luminescens... [more]
GCST_ERWCT1.697e-2440.96Aminomethyltransferase OS=Erwinia carotovora subsp... [more]
GCST_YERPY2.217e-2438.42Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPS2.217e-2438.42Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPP2.217e-2438.42Aminomethyltransferase OS=Yersinia pestis (strain ... [more]
GCST_YERPN2.217e-2438.42Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPG2.217e-2438.42Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPE2.217e-2438.42Aminomethyltransferase OS=Yersinia pestis GN=gcvT ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739855 ID=CK739855; Name=CK739855; organism=Citrus sinensis; type=EST; length=531bp
CTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTACA
AATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGGTGAAGGA
TGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTTG
CTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGTC
TCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCCT
TGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTAT
ACTTCGGGGAATTCCGAATTTTGGATATCAATGGTGTATCCTGCTTTCTC
ACTAGGACAGGGTACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATC
TGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAAATCTGAAGGAA
AGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCT
GGCTTATGTTTATATGGTAATGACATGGAAC
back to top