CK739855

Overview
NameCK739855
Unique NameCK739855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YERPB (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 3
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +   G      I     F+  TGYTGE G+EI++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YERPA (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 3
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +   G      I     F+  TGYTGE G+EI++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YERP3 (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 3
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +   G      I     F+  TGYTGE G+EI++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_YERE8 (Aminomethyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 68/177 (38.42%), Postives = 100/177 (56.50%), Query Frame = 3
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   N +GG IDD ++  +++D+  LVVN+  R+KDL  I  H + +     DV+  + D+ +L+A+QGP A   +  L   +  +   G      I     F+  TGYTGE G+EI++P ER V+  + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTAMLNASGGVIDDLIVYFLREDYFRLVVNSATREKDLNWIIQHAEPYQV---DVT--VRDDLALVAVQGPTAQQKVATLLTSEQQQAIAGMKPFFGIQADDLFIATTGYTGEAGYEIALPKERVVEFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_THEM4 (Aminomethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.217e-24
Identity = 69/177 (38.98%), Postives = 99/177 (55.93%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEI-SVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D   L PG    T   NENGG +DD +  K+ ++   LV+NA   +KD + ++   +SF     + S    DE  L+A+QGP A   LQ +T  DL ++ +  F   ++  +   ++RTGYTGEDGFEI +   +  + + K +L  +   V   GLGARD LRLEA L LYGNDM+
Sbjct:   72 DFKNLKPGEIVYTAMCNENGGFVDDLLAYKISEEKAMLVINASNIEKDFSWMKKISESFDVTLENKS----DEYVLIAVQGPNAQKTLQKITNVDLEQIGYYTFTEGNVLDIKAIISRTGYTGEDGFEIYTTDKDGIIKIWKKLLNLN---VIPAGLGARDCLRLEASLLLYGNDMD 241          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_CHLT3 (Aminomethyltransferase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKS-EGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DV  L  G    ++   E+GG +DD ++ K+ D+H +L+VNA   +KD   ++ H          V  +  DE SL+A+QGP A  VL  LT   L  + +  F   D+ G    ++RTGYTGE GFE+ + +E A ++  A++E      +   GLGARD+LRLE G  LYG++++
Sbjct:   72 DVESLCDGKAQYSLLLYEDGGVVDDLLVYKIADEHYFLIVNASNIEKDFDWLKQHQPDDEV----VLENRSDELSLIAIQGPKAEAVLSKLTDVPLDAIKYYHFVFGDVCGKRTLISRTGYTGEAGFELCMANEHAEEIWHALIEAGLPFGIVPVGLGARDTLRLEMGYSLYGHEID 244          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACSU (Aminomethyltransferase OS=Bacillus subtilis GN=gcvT PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 71/178 (39.89%), Postives = 104/178 (58.43%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERSLLALQGPLAAPVLQHLTKDDLSKLY-FGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRL-TGLGARDSLRLEAGLCLYGNDM 527
            DV+ L PG    T     +GG++DD +I +  ++   LV+NA   DKDLA ++ H        GDV   +  D+ +LLA+QGP A  +L++LT  D+S L  F      DI+G    ++RTGYTGEDG+EI   S+ A+ + K I++  +    +  GLGARD+LR EA L LYG ++
Sbjct:   73 DVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKEH------AAGDVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAMHIWKKIIDAGDAYGLIPCGLGARDTLRFEAKLPLYGQEL 244          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACHK (Aminomethyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQEL 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACCR (Aminomethyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQEL 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACCN (Aminomethyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 67/177 (37.85%), Postives = 105/177 (59.32%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++ +E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A+ + + +LE   E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDTKVVNVSNEIAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDVLVDGIPALVSRTGYTGEDGFEIYCKSEDAIKIWEKLLEVGEEDSLKPCGLGARDTLRFEATLPLYGQEL 246          
The following BLAST results are available for this feature:
BLAST of CK739855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_YERPB2.217e-2438.42Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPA2.217e-2438.42Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERP32.217e-2438.42Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERE82.217e-2438.42Aminomethyltransferase OS=Yersinia enterocolitica ... [more]
GCST_THEM42.217e-2438.98Aminomethyltransferase OS=Thermosipho melanesiensi... [more]
GCST_CHLT32.895e-2436.72Aminomethyltransferase OS=Chloroherpeton thalassiu... [more]
GCST_BACSU2.895e-2439.89Aminomethyltransferase OS=Bacillus subtilis GN=gcv... [more]
GCST_BACHK2.895e-2438.42Aminomethyltransferase OS=Bacillus thuringiensis s... [more]
GCST_BACCR2.895e-2438.42Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACCN2.895e-2437.85Aminomethyltransferase OS=Bacillus cereus subsp. c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739855 ID=CK739855; Name=CK739855; organism=Citrus sinensis; type=EST; length=531bp
CTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTACA
AATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGGTGAAGGA
TGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTTG
CTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGTC
TCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCCT
TGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTAT
ACTTCGGGGAATTCCGAATTTTGGATATCAATGGTGTATCCTGCTTTCTC
ACTAGGACAGGGTACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATC
TGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAAATCTGAAGGAA
AGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCT
GGCTTATGTTTATATGGTAATGACATGGAAC
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