CK739855

Overview
NameCK739855
Unique NameCK739855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:566..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACC4 (Aminomethyltransferase OS=Bacillus cereus (strain B4264) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKKDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQEL 246
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACC3 (Aminomethyltransferase OS=Bacillus cereus (strain 03BB102) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQEL 246
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACC2 (Aminomethyltransferase OS=Bacillus cereus (strain G9842) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNNILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQEL 246
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACC0 (Aminomethyltransferase OS=Bacillus cereus (strain AH820) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQEL 246
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACAN (Aminomethyltransferase OS=Bacillus anthracis GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQEL 246
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACAH (Aminomethyltransferase OS=Bacillus thuringiensis (strain Al Hakam) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQEL 246
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACAC (Aminomethyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQEL 246
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACAA (Aminomethyltransferase OS=Bacillus anthracis (strain A0248) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQEL 246
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SYNR3 (Aminomethyltransferase OS=Synechococcus sp. (strain RCC307) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.782e-24
Identity = 73/179 (40.78%), Postives = 97/179 (54.19%), Query Frame = 3 
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERS---LLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D+  + PG    TV  NE GG  DD ++    D  + +V+NA C D D A I+  ++    +G  VS    D ++   LLALQGP A   L+ L  + L+ +     R L I G   F  RTGYTGEDGFE+ + +     L + +LE     V   GLGARDSLRLEA + LYGNDM+
Sbjct:   72 DLQRIGPGEAQYTVLLNEAGGIRDDLIVYDRSDTEVVVVINAACADSDTAWIKQQLEP---QGVSVS----DRKAGGVLLALQGPEAVGRLERLCGESLAGVPRFGHRDLTIKGEPVFAARTGYTGEDGFELLLTASAGQSLWRQLLEDG---VAPCGLGARDSLRLEAAMHLYGNDMD 240
[Close]
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SERP5 (Aminomethyltransferase OS=Serratia proteamaculans (strain 568) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.782e-24
Identity = 68/177 (38.42%), Postives = 97/177 (54.80%), Query Frame = 3 
Query:    3 DVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA IE H   +      V+  + D+ +L+A+QGP A      L   +      G      +     F+  TGYTGE G+EI++P E+ VD  + +L      V+  GLGARD+LRLEAG+ LYG +M+
Sbjct:   73 DVAKLTQPGKALYTGMLNASGGVIDDLIVYFLTEDYFRLVVNSATREKDLAWIEEHAAPY-----GVALTVRDDLALVAVQGPQAKERAATLFTPEQKSAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPKEQVVDFWQKLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMD 241
The following BLAST results are available for this feature:
BLAST of CK739855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_BACC42.895e-2438.42Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC32.895e-2438.42Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC22.895e-2438.42Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC02.895e-2438.42Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACAN2.895e-2438.42Aminomethyltransferase OS=Bacillus anthracis GN=gc... [more]
GCST_BACAH2.895e-2438.42Aminomethyltransferase OS=Bacillus thuringiensis (... [more]
GCST_BACAC2.895e-2438.42Aminomethyltransferase OS=Bacillus anthracis (stra... [more]
GCST_BACAA2.895e-2438.42Aminomethyltransferase OS=Bacillus anthracis (stra... [more]
GCST_SYNR33.782e-2440.78Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SERP53.782e-2438.42Aminomethyltransferase OS=Serratia proteamaculans ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739855 ID=CK739855; Name=CK739855; organism=Citrus sinensis; type=EST; length=531bp
CTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTACA
AATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGGTGAAGGA
TGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTTG
CTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGTC
TCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCCT
TGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTAT
ACTTCGGGGAATTCCGAATTTTGGATATCAATGGTGTATCCTGCTTTCTC
ACTAGGACAGGGTACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATC
TGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAAATCTGAAGGAA
AGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCT
GGCTTATGTTTATATGGTAATGACATGGAAC
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