CK739855

Overview
NameCK739855
Unique NameCK739855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACCZ (Aminomethyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.782e-24
Identity = 68/177 (38.42%), Postives = 105/177 (59.32%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++ +E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSNEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKPCGLGARDTLRFEATLPLYGQEL 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SYNP2 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.939e-24
Identity = 73/177 (41.24%), Postives = 99/177 (55.93%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKD-DLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            ++A LAPG    TV  N++GG IDD +     D   +L+VNA    KD   +  H+   TA+G  ++  +  E  LLA+QGP A   LQ + ++ DL+ L         I G + F+ RTGYTGEDGFE+ V       L  A+++     V   GLGARD+LRLEAGL LYG DM+
Sbjct:   74 NLARLAPGQAQYTVLLNDHGGIIDDVIYYHQGDRQGFLIVNAATTQKDWDWLTHHL---TAQGITLT-DVSQENILLAIQGPQAEKALQPVVENLDLATLKLFNHGQGQIFGETAFIARTGYTGEDGFEVMVAPTAGKKLWSALIDAG---VMPCGLGARDTLRLEAGLHLYGQDMD 243          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_STRMK (Aminomethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.939e-24
Identity = 71/177 (40.11%), Postives = 97/177 (54.80%), Query Frame = 3
Query:   21 PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDD----LSKLYFGEFRILDI---NGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            PG    +   N  GG IDD ++  + DD   +VVNA  R+KDLA +      F      VS     + ++LA+QGP A  ++  L ++     L+KL  G F  L +   +GV  F+ RTGYTGEDGFEI +P +  V     +L      V+  GLGARD+LRLEAG+ LYG DM+
Sbjct:   80 PGKALYSCMLNPRGGVIDDLIVYYLGDDFFRMVVNASTREKDLAWLREQAAPF-----GVSVEQRPDLAILAVQGPQARAIVIGLARESEREALTKL--GRFAALQVQSDDGVELFVARTGYTGEDGFEILLPQDAVVAFWNRLLAAG---VKPAGLGARDTLRLEAGMNLYGQDMD 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_LISMH (Aminomethyltransferase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.939e-24
Identity = 74/177 (41.81%), Postives = 101/177 (57.06%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQGPLAAPVLQHLTKDDLSKL-YFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            D+  +  G     +   E GG++DD V+ K  +    LVVNA    KD   +  +++      GDVS  ++  E   LALQGP A  +L  LT  DLS + +FG     D+ GV   ++R+GYTGEDGFEI +PS  A  + +AIL  +EG V   GLGARD+LRLEA L LYG ++
Sbjct:   75 DIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTAKDFEWMVKNIQ------GDVSVTNVSSEYGQLALQGPNAEKILAKLTDVDLSSISFFGFVEDADVAGVKTIISRSGYTGEDGFEIYMPSADAGKVFEAIL--AEG-VAPIGLGARDTLRLEAVLALYGQEL 242          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_CYAP8 (Aminomethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.939e-24
Identity = 69/182 (37.91%), Postives = 102/182 (56.04%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSV-----ITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKL-YFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D+  L PG    TV  N  GG IDD +     IT+  +    ++VNAG  +KD   + +H+ +      D+S     E+ L+A+QGP +   LQ   ++DLS++ +FG F    +   + F+ RTGYTGEDGFE+ V  E   DL +++ +     V   GLGARD+LRLEA +CLY  D++
Sbjct:   75 DLERLQPGQAQYTVLLNPQGGIIDDIIVYYQGITETGEQRANIIVNAGTTEKDKTWLLSHLDTQKITFKDLS----GEKVLIAVQGPQSVAKLQAFVQEDLSQVGFFGHFEGTVLTKPA-FIARTGYTGEDGFEVMVDPEVGQDLWRSLFQAG---VTPCGLGARDTLRLEAAMCLYSQDID 248          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACCQ (Aminomethyltransferase OS=Bacillus cereus (strain Q1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.939e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKPCGLGARDTLRFEATLPLYGQEL 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACC7 (Aminomethyltransferase OS=Bacillus cereus (strain AH187) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.939e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKPCGLGARDTLRFEATLPLYGQEL 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BACC1 (Aminomethyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.939e-24
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI-LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE-KSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A  +LQ +  +DL ++ F +F+  + ++G+   ++RTGYTGEDGFEI   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++
Sbjct:   75 DVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-----GDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKPCGLGARDTLRFEATLPLYGQEL 246          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_THET2 (Aminomethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.450e-24
Identity = 70/175 (40.00%), Postives = 96/175 (54.86%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            D   L  G    ++  NE GG +DD  + ++ ++   +VVNA    KDLAH++A  K F  +  D S    +  +LLALQGP A  +LQ L   DLS     +     + G    L RTGYTGEDGFE+ +  E A  +  A++E      +  GLGARDSLRLEAG  LYG+++
Sbjct:   72 DAGKLKVGRAQYSMLPNERGGVVDDIYLYRLGEEEYLMVVNAANIAKDLAHLQALAKGFRVELEDAS----ERTALLALQGPKAQALLQGLVDVDLSTKRKNDVFPARVAGRPARLARTGYTGEDGFELFLAPEDAEPVFLALVEAG---AKPAGLGARDSLRLEAGFPLYGHEL 239          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SYNS9 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9902) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.450e-24
Identity = 77/182 (42.31%), Postives = 97/182 (53.30%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKV-----KDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVS--CFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDM 527
            D+  + PG    TV  N+ GG  DD +I  +     K   + LV+NA C D D A I   M+      G     I +   LLALQGP A P+L+ L+ +DLS L     R L I G+S   F  RTGYTGEDG E+ + +E    L   +LEK    V   GLGARD+LRLEA + LYG DM
Sbjct:   72 DLHRIGPGEACYTVLLNDQGGIRDDLIIYDLGAIDEKRGALVLVINAACADSDTAWIRERMEP----AGLTVTDIKNNGVLLALQGPQAIPLLEQLSGEDLSGLPRFGHRDLQIQGLSNSVFTARTGYTGEDGAELLLTAEDGQLLWSQLLEKG---VAPCGLGARDTLRLEAAMHLYGQDM 246          
The following BLAST results are available for this feature:
BLAST of CK739855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_BACCZ3.782e-2438.42Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_SYNP24.939e-2441.24Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_STRMK4.939e-2440.11Aminomethyltransferase OS=Stenotrophomonas maltoph... [more]
GCST_LISMH4.939e-2441.81Aminomethyltransferase OS=Listeria monocytogenes s... [more]
GCST_CYAP84.939e-2437.91Aminomethyltransferase OS=Cyanothece sp. (strain P... [more]
GCST_BACCQ4.939e-2438.42Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC74.939e-2438.42Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC14.939e-2438.42Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_THET26.450e-2440.00Aminomethyltransferase OS=Thermus thermophilus (st... [more]
GCST_SYNS96.450e-2442.31Aminomethyltransferase OS=Synechococcus sp. (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739855 ID=CK739855; Name=CK739855; organism=Citrus sinensis; type=EST; length=531bp
CTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTACA
AATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGGTGAAGGA
TGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTTG
CTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGTC
TCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCCT
TGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTAT
ACTTCGGGGAATTCCGAATTTTGGATATCAATGGTGTATCCTGCTTTCTC
ACTAGGACAGGGTACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATC
TGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAAATCTGAAGGAA
AGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCT
GGCTTATGTTTATATGGTAATGACATGGAAC
back to top