CK739856

Overview
NameCK739856
Unique NameCK739856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL7_ORYSJ (4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.557e-22
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 243
            LE +L S  ++ DAAV+PYP EEAGQ+P+A VV+QP S L EAE+M  VA+QV+PYKKIR+V F+++IPKS +GKILR EL
Sbjct:  466 LELVLHSLPQIVDAAVMPYPHEEAGQIPVALVVKQPGSKLTEAEVMYNVAKQVAPYKKIRKVLFVDSIPKSPSGKILRREL 546          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL1_ORYSJ (4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.258e-22
Identity = 45/81 (55.56%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 243
            LE LLLSH E+ DA VIP+PD +AG++P+A+VVR P SSL E ++ +F+ +QV+ YK+++RV F+ ++PKSA+GKILR +L
Sbjct:  463 LEGLLLSHPEILDAVVIPFPDAKAGEVPIAYVVRSPDSSLTEVDVQKFIEKQVAYYKRLKRVTFVGSVPKSASGKILRRQL 543          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL3_ORYSJ (4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 49/97 (50.52%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK---VAVPSGSSCRL 282
            LE +L+ H E+ D AV    DEEAG++P+AFVVR+  S+L+  ++ME+VA+QV+PYK++R+V F+ AIPKS AGK+LR  LR     A  + SSC +
Sbjct:  491 LEEVLIHHPEILDVAVTSAEDEEAGEIPVAFVVRRSGSNLSCKQVMEYVAKQVAPYKRVRKVVFVEAIPKSPAGKVLRRLLRNSHDTAAAATSSCSI 587          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL6_ARATH (4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.049e-20
Identity = 45/91 (49.45%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSS 273
            LE +L+SH  + DAAV   P+EE G++P+AFVVR+  ++L+E +++ +VA QV+PY+K+R+V  +N+IPKS  GKILR EL+++   S SS
Sbjct:  474 LEAVLVSHPLIIDAAVTAAPNEECGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKELKRILTNSVSS 564          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 45/82 (54.88%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LLL+H  ++DAAV+P  DE+AG++P+AFVVR   S++ E E+ +F+++QV  YK+I+RV F++AIPKS +GKILR +LR
Sbjct:  452 LEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDLR 533          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.159e-19
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LL++H  +ADAAV+P  D+ AG++P+AFVVR   S + E  I EF+++QV  YK++ +V FI+AIPKSA+GKILR ELR
Sbjct:  482 LESLLIAHPSIADAAVVPQKDDVAGEVPVAFVVRAADSDITEESIKEFISKQVVFYKRLHKVHFIHAIPKSASGKILRRELR 563          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL8_ORYSJ (Putative 4-coumarate--CoA ligase-like 8 OS=Oryza sativa subsp. japonica GN=4CLL8 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.513e-19
Identity = 44/85 (51.76%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS-LNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 252
            LE +L +H ++ DAAV PYPD+EAG++PMA+VV++  S  L E E++ FV  +V+PYKKIR+V F+++IP+S +GKILR +L+ +
Sbjct:  514 LEDVLATHPDIHDAAVAPYPDKEAGEIPMAYVVKKQGSGHLQEDEVISFVQNKVAPYKKIRKVVFVDSIPRSPSGKILRRQLKNL 598          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.581e-19
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LL++H  +ADAAV+P   EEAG++P+AFVV+   S ++E EI EFVA+QV  YKKI RV F++AIPKS +GKILR +LR
Sbjct:  452 LEALLVAHPSIADAAVVPQKHEEAGEVPVAFVVKS--SEISEQEIKEFVAKQVIFYKKIHRVYFVDAIPKSPSGKILRKDLR 531          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.403e-19
Identity = 42/82 (51.22%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LL++H +++DAAV+P  DE+AG++P+AFVVR   S++ E E+ +F+++QV  YK+I+RV F+  +PKS +GKILR +LR
Sbjct:  455 LEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLR 536          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.403e-19
Identity = 42/82 (51.22%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LL++H +++DAAV+P  DE+AG++P+AFVVR   S++ E E+ +F+++QV  YK+I+RV F+  +PKS +GKILR +LR
Sbjct:  455 LEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLR 536          
The following BLAST results are available for this feature:
BLAST of CK739856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
4CLL7_ORYSJ5.557e-2262.964-coumarate--CoA ligase-like 7 OS=Oryza sativa sub... [more]
4CLL1_ORYSJ7.258e-2255.564-coumarate--CoA ligase-like 1 OS=Oryza sativa sub... [more]
4CLL3_ORYSJ1.369e-2050.524-coumarate--CoA ligase-like 3 OS=Oryza sativa sub... [more]
4CLL6_ARATH3.049e-2049.454-coumarate--CoA ligase-like 6 OS=Arabidopsis thal... [more]
4CL2_TOBAC5.201e-2054.884-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CL2_ORYSJ1.159e-1956.10Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CLL8_ORYSJ1.513e-1951.76Putative 4-coumarate--CoA ligase-like 8 OS=Oryza s... [more]
4CL_PINTA2.581e-1959.764-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL2_SOLTU4.403e-1951.224-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_SOLTU4.403e-1951.224-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6247 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739856 ID=CK739856; Name=CK739856; organism=Citrus sinensis; type=EST; length=408bp
CTAGAACACTTGCTTCTGTCCCATCGGGAGGTTGCTGATGCTGCAGTTAT
TCCATATCCTGATGAAGAAGCTGGTCAGATGCCCATGGCTTTTGTGGTAA
GGCAGCCGCACAGCAGTCTCAACGAAGCAGAAATAATGGAATTTGTGGCA
AGACAGGTGTCACCGTACAAGAAAATAAGGCGCGTAGCTTTCATCAATGC
TATACCTAAAAGTGCTGCTGGCAAAATATTGAGGATGGAGTTGAGGAAGG
TTGCTGTTCCATCTGGGTCTTCTTGTAGATTGTGATCTTTATAATGGCTG
TATACTTTAGCTTGTTTCCAATGTGAATTTCAGTGTAACTTTTTATTTTA
TTTATAAGAGGACATGCAAGGGGCAAATTTTGAAGTGTAAAAAAAAAAAA
AAAAAAAA
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