CK739856

Overview
NameCK739856
Unique NameCK739856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.750e-19
Identity = 41/82 (50.00%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            +E LLL+H  ++DAAV+P  DE+AG++P+AFVVR   S++ E E+ +F+++QV  YK+++RV F+  +PKS +GKILR +LR
Sbjct:  457 IEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSAITEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILRKDLR 538          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.727e-18
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LLL+H  ++DAAV+P  DE+AG++P+AFVVR    +  E EI +FV++QV  YK+I RV F++AIPKS +GKILR +LR
Sbjct:  453 LEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLR 534          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.727e-18
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LLL+H  ++DAAV+P  DE+AG++P+AFVVR    +  E EI +FV++QV  YK+I RV F++AIPKS +GKILR +LR
Sbjct:  453 LEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLR 534          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.358e-18
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LL+SH  +ADAAV+P  D  AG++P+AFVVR     L E  + EF+A+QV  YK++ +V F++AIPKS +GKILR +LR
Sbjct:  470 LEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLR 551          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.304e-18
Identity = 41/82 (50.00%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LL++H  +ADAAV+P  DE AG++P+AFVVR   + + E ++ E+VA+QV  YK++ +V F+ +IPKS +GKILR +L+
Sbjct:  476 LESLLINHHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKDLK 557          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.084e-17
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LLL+H  ++DAAV+P  DE AG++P+AFVV+    ++ E EI +F+++QV  YK+I RV F+ AIPK+ +GKILR +LR
Sbjct:  461 LEALLLTHPCISDAAVVPMKDEAAGEVPVAFVVKSNGHNITEDEIKQFISKQVIFYKRINRVFFVEAIPKAPSGKILRKDLR 542          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.850e-17
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE +LL+H  V D AV+P PDEEAG++P A VV  P ++  E +I+ FVA  V+ YKK+R V F+++IPKS +GKI+R  LR
Sbjct:  452 LEAILLTHPSVEDVAVVPLPDEEAGEIPAACVVINPKATEKEEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLR 533          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.850e-17
Identity = 44/97 (45.36%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR---KVAVPSGSSCRL 282
            LE LL++H ++ DAAV+P  DE AG++P+AF+VR   S+++E EI +FVA++V  YK++ +V F ++IPKS +GKILR +LR      +P+  + +L
Sbjct:  461 LEALLITHPDIKDAAVVPMIDEIAGEVPVAFIVRIEGSAISENEIKQFVAKEVVFYKRLNKVFFADSIPKSPSGKILRKDLRAKLAAGIPTNDNTQL 557          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL1_SOYBN (4-coumarate--CoA ligase 1 (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.416e-17
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV-RQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE LLL+H +++DAAV+P  DE AG++P+AFVV    ++   E EI +F+++QV  YK+I RV FI+AIPKS +GKILR +LR
Sbjct:  202 LEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVISNGYTDTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLR 284          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.382e-17
Identity = 39/82 (47.56%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 246
            LE +L++H  VADAAV+P  D+  G++P+AFVV +  S + + EI ++VA+QV  YK++ ++ F++AIPK+ +GKILR +LR
Sbjct:  448 LEAMLIAHAAVADAAVVPMKDDSCGEIPVAFVVARDGSGITDDEIKQYVAKQVVFYKRLHKIFFVDAIPKAPSGKILRKDLR 529          
The following BLAST results are available for this feature:
BLAST of CK739856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
4CL1_TOBAC5.750e-1950.004-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CL2_PETCR3.727e-1856.104-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_PETCR3.727e-1856.104-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL2_SOYBN6.358e-1853.664-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CL3_ARATH8.304e-1850.004-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CL_VANPL1.084e-1752.444-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CLL1_ARATH1.850e-1752.444-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
4CL4_ORYSJ1.850e-1745.36Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]
4CL1_SOYBN2.416e-1754.224-coumarate--CoA ligase 1 (Fragment) OS=Glycine ma... [more]
4CL5_ORYSJ5.382e-1747.56Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6247 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739856 ID=CK739856; Name=CK739856; organism=Citrus sinensis; type=EST; length=408bp
CTAGAACACTTGCTTCTGTCCCATCGGGAGGTTGCTGATGCTGCAGTTAT
TCCATATCCTGATGAAGAAGCTGGTCAGATGCCCATGGCTTTTGTGGTAA
GGCAGCCGCACAGCAGTCTCAACGAAGCAGAAATAATGGAATTTGTGGCA
AGACAGGTGTCACCGTACAAGAAAATAAGGCGCGTAGCTTTCATCAATGC
TATACCTAAAAGTGCTGCTGGCAAAATATTGAGGATGGAGTTGAGGAAGG
TTGCTGTTCCATCTGGGTCTTCTTGTAGATTGTGATCTTTATAATGGCTG
TATACTTTAGCTTGTTTCCAATGTGAATTTCAGTGTAACTTTTTATTTTA
TTTATAAGAGGACATGCAAGGGGCAAATTTTGAAGTGTAAAAAAAAAAAA
AAAAAAAA
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