CK739857 | Citrus Genome Database

Overview


Name	CK739857
Unique Name	CK739857
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	407

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3300	contig	Csv1_Contig3300:320..724.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.080e-14
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   76 CLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117

HSP 2 Score: 35.4242 bits (80), Expect = 1.080e-14
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 3

Query:    3 TGSLAPCIVYLRSGGPIPVPCCNGV 77
            +G+LA CI YL   GP+P  CC GV
Sbjct:   33 SGNLAACIGYLTQNGPLPRGCCTGV 57

HSP 3 Score: 25.0238 bits (53), Expect = 1.080e-14
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 1

Query:  100 RTTPDRQTACNLL 138
            RTTPDRQ AC  L
Sbjct:   65 RTTPDRQQACRCL 77

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.129e-14
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 2

Query:  119 KLHATCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            ++  TCLK AAG+I  +N   A GLP  CGV+IPYKIS STDCSKV+
Sbjct:   68 QIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114

HSP 2 Score: 33.8834 bits (76), Expect = 3.129e-14
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 3

Query:    3 TGSLAPCIVYLRSGGPIPVPCCNGVR 80
            T +LAPC+ YLR+ GP+   CC GV+
Sbjct:   31 TSNLAPCLAYLRNTGPLG-RCCGGVK 55

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 8.520e-14
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            CLK AAGSI  LN NNA  LP  C V+IPYKIS ST+C+ +R
Sbjct:   74 CLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115

HSP 2 Score: 30.0314 bits (66), Expect = 8.520e-14
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 SLAPCIVYLRSGGPIPVPCCNGVR 80
            +LAPC+ YL+ G      CC GVR
Sbjct:   33 ALAPCLGYLQGGPGPSAQCCGGVR 56

HSP 3 Score: 26.9498 bits (58), Expect = 8.520e-14
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1

Query:  103 TTPDRQTACNLLEAS 147
            TTPDRQ ACN L+++
Sbjct:   64 TTPDRQAACNCLKSA 78

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.570e-13
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 2

Query:  131 TCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 256
            +CLK AAG++  +NPNNA  LP  CGV+IPYKIS ST+C+ +
Sbjct:   49 SCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90

HSP 2 Score: 35.039 bits (79), Expect = 1.570e-13
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 3

Query:    6 GSLAPCIVYLRSGGPIPVPCCNGVR 80
            G+LA CI +L+ GG +P  CC GV+
Sbjct:    8 GNLAQCIGFLQKGGVVPPSCCTGVK 32

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.378e-13
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            CLK AAG+I NLNP NA  LP  C V+IPYKIS +T+C+ ++
Sbjct:   76 CLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117

HSP 2 Score: 31.9574 bits (71), Expect = 2.378e-13
Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 3

Query:    3 TGSLAPCIVYLRSGGPIPVPCCNGVR 80
            TG LAPCI YL  G      CC GV+
Sbjct:   33 TGDLAPCIPYLTGGAGPTDSCCAGVK 58

HSP 3 Score: 23.483 bits (49), Expect = 2.378e-13
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1

Query:  103 TTPDRQTACNLLEAS 147
            TT DRQ ACN L+ +
Sbjct:   66 TTADRQAACNCLKTA 80

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 9.389e-13
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            CL  AA + P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   76 CLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117

HSP 2 Score: 35.4242 bits (80), Expect = 9.389e-13
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 3

Query:    3 TGSLAPCIVYLRSGGPIPVPCCNGV 77
            +G+LA CI YL   GP+P  CC GV
Sbjct:   33 SGNLAACIGYLTQNGPLPRGCCTGV 57

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 9.824e-13
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 256
            CL  A+ SI  +N   A GLP  CGV+IPYKIS ST+C +V
Sbjct:   50 CLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90

HSP 2 Score: 45.4394 bits (106), Expect = 9.824e-13
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 3

Query:   12 LAPCIVYLRSGGPIPVPCCNGVR 80
            LAPCI YLRS GP+PV CCNGV+
Sbjct:   10 LAPCINYLRSAGPLPVACCNGVK 32

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.220e-12
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            CL  AA ++P +N   A GLP+ACGV+IPYKIS +T+C+ V+
Sbjct:   76 CLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117

HSP 2 Score: 37.7354 bits (86), Expect = 1.220e-12
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 3

Query:    3 TGSLAPCIVYLRSGGPIPVPCCNGV 77
            +G+LA CI YL   GP+P  CC+GV
Sbjct:   33 SGNLAACIGYLTQNGPVPTACCSGV 57

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.480e-12
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 2

Query:  119 KLHATCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            K   TCLK AA +I  ++   A GLP ACGV+IPYKIS STDCSKV+
Sbjct:   68 KTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114

HSP 2 Score: 29.261 bits (64), Expect = 3.480e-12
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 3

Query:   12 LAPCIVYLRSGGPIPVPCCNGVR 80
            LAPC+ YL+  GP+   CC GV+
Sbjct:   34 LAPCLPYLQGRGPLG-SCCGGVK 55

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.520e-12
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 2

Query:   98 PEPHLTAKLHATCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            PE   TA    TCLK AA SI  ++   A GLP  CGV+IPYKIS STDCS V+
Sbjct:   64 PEDRKTA---CTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114

HSP 2 Score: 30.4166 bits (67), Expect = 4.520e-12
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 3

Query:    3 TGSLAPCIVYLRSGGPIPVPCCNGVR 80
            T  LAPC+ YL   GP+   CC GV+
Sbjct:   31 TSGLAPCLPYLEGRGPLG-GCCGGVK 55

The following BLAST results are available for this feature:

BLAST of CK739857 vs. ExPASy Swiss-Prot

BLAST of CK739857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34


Match Name	E-value	Identity	Description
NLTPB_BRAOT	1.080e-14	64.29	Non-specific lipid-transfer protein B OS=Brassica ...	[more]
NLTP1_TOBAC	3.129e-14	61.70	Non-specific lipid-transfer protein 1 OS=Nicotiana...	[more]
NLTP_CICAR	8.520e-14	64.29	Non-specific lipid-transfer protein OS=Cicer ariet...	[more]
NLTP1_PHAAU	1.570e-13	59.52	Non-specific lipid-transfer protein 1 OS=Phaseolus...	[more]
NLTP3_LENCU	2.378e-13	59.52	Non-specific lipid-transfer protein 3 OS=Lens culi...	[more]
NLTP1_BRANA	9.389e-13	61.90	Non-specific lipid-transfer protein 1 OS=Brassica ...	[more]
NLTP5_VITSX	9.824e-13	56.10	Non-specific lipid-transfer protein P5 OS=Vitis sp...	[more]
NLTP3_BRANA	1.220e-12	54.76	Non-specific lipid-transfer protein 3 OS=Brassica ...	[more]
NLTP2_TOBAC	3.480e-12	61.70	Non-specific lipid-transfer protein 2 OS=Nicotiana...	[more]
NLTP2_SOLLC	4.520e-12	57.41	Non-specific lipid-transfer protein 2 OS=Solanum l...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6248 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739857 ID=CK739857; Name=CK739857; organism=Citrus sinensis; type=EST; length=407bp
TGACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCT
ATACCTGTGCCATGCTGCAACGGCGTCAGGGTCTCTCAACGCTGCCGCCA
GAACCACACCTGACCGCCAAACTGCATGCAACTTGCTTGAAGCAAGCCGC
CGGATCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAG
CTTGTGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCT
AAGGTCCGGTGAACAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGA
CGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGAATTAT
GAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTC
ATGTTGT