CK739857 | Citrus Genome Database

Overview


Name	CK739857
Unique Name	CK739857
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	407

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3300	contig	Csv1_Contig3300:320..724.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 6.754e-12
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 2

Query:  131 TCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            TCLK AA S   L+   A  LP  C V+IPYKIS STDCSKV+
Sbjct:   72 TCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114

HSP 2 Score: 30.8018 bits (68), Expect = 6.754e-12
Identity = 13/26 (50.00%), Postives = 18/26 (69.23%), Query Frame = 3

Query:    3 TGSLAPCIVYLRSGGPIPVPCCNGVR 80
            T +LAPC+ YL + GP+   CC GV+
Sbjct:   31 TSTLAPCLPYLMNRGPLG-GCCGGVK 55

HSP 3 Score: 23.483 bits (49), Expect = 6.754e-12
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 1

Query:  100 RTTPDRQTACNLLEAS 147
            +TT DRQTAC  L+++
Sbjct:   62 QTTVDRQTACTCLKSA 77

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.453e-11
Identity = 26/41 (63.41%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 256
            CLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:   77 CLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117

HSP 2 Score: 28.8758 bits (63), Expect = 1.453e-11
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 SLAPCIVYLRSGGPIPVPCCNGVR 80
            +++PC+ Y R G      CC+GVR
Sbjct:   36 AVSPCLSYARGGSGPSAACCSGVR 59

HSP 3 Score: 23.483 bits (49), Expect = 1.453e-11
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1

Query:  103 TTPDRQTACNLLE 141
            TT DR+TACN L+
Sbjct:   67 TTADRRTACNCLK 79

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.453e-11
Identity = 26/41 (63.41%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 256
            CLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:   76 CLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116

HSP 2 Score: 28.8758 bits (63), Expect = 1.453e-11
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 SLAPCIVYLRSGGPIPVPCCNGVR 80
            +++PC+ Y R G      CC+GVR
Sbjct:   35 AVSPCLSYARGGSGPSAACCSGVR 58

HSP 3 Score: 23.483 bits (49), Expect = 1.453e-11
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1

Query:  103 TTPDRQTACNLLE 141
            TT DR+TACN L+
Sbjct:   66 TTADRRTACNCLK 78

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.453e-11
Identity = 26/41 (63.41%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 256
            CLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:   77 CLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117

HSP 2 Score: 28.8758 bits (63), Expect = 1.453e-11
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 SLAPCIVYLRSGGPIPVPCCNGVR 80
            +++PC+ Y R G      CC+GVR
Sbjct:   36 AVSPCLSYARGGSGPSAACCSGVR 59

HSP 3 Score: 23.483 bits (49), Expect = 1.453e-11
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1

Query:  103 TTPDRQTACNLLE 141
            TT DR+TACN L+
Sbjct:   67 TTADRRTACNCLK 79

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.865e-11
Identity = 26/44 (59.09%), Postives = 29/44 (65.91%), Query Frame = 2

Query:  134 CLKQAAGSIP--NLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            CLKQA   IP  N N   A GLP  CGV+IPYKIS STDC  ++
Sbjct:   80 CLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123

HSP 2 Score: 31.9574 bits (71), Expect = 1.865e-11
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 3

Query:    9 SLAPCIVYLRSGGPIPVPCCNGVR 80
            +L PCI Y+ +GG +   CC GVR
Sbjct:   39 NLTPCINYVANGGALNPSCCTGVR 62

HSP 3 Score: 21.9422 bits (45), Expect = 1.865e-11
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1

Query:  100 RTTPDRQTACNLLE 141
            +TT DRQ+ CN L+
Sbjct:   69 QTTADRQSICNCLK 82

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.886e-11
Identity = 24/41 (58.54%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 256
            CLK AA  I  LN  NA  +P  CGVS+PY IS S DCS+V
Sbjct:   75 CLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115

HSP 2 Score: 29.261 bits (64), Expect = 1.886e-11
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 3

Query:    9 SLAPCIVYLRSGGPIPVPCCNGVR 80
            ++ PC+ Y R G      CC+GVR
Sbjct:   34 AVGPCLTYARGGAGPSAACCSGVR 57

HSP 3 Score: 24.6386 bits (52), Expect = 1.886e-11
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  103 TTPDRQTACNLLEASRR 153
            TT DR+TACN L+ + R
Sbjct:   65 TTADRRTACNCLKNAAR 81

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.886e-11
Identity = 24/41 (58.54%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 256
            CLK AA  I  LN  NA  +P  CGVS+PY IS S DCS+V
Sbjct:   75 CLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115

HSP 2 Score: 29.261 bits (64), Expect = 1.886e-11
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 3

Query:    9 SLAPCIVYLRSGGPIPVPCCNGVR 80
            ++ PC+ Y R G      CC+GVR
Sbjct:   34 AVGPCLTYARGGAGPSAACCSGVR 57

HSP 3 Score: 24.6386 bits (52), Expect = 1.886e-11
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  103 TTPDRQTACNLLEASRR 153
            TT DR+TACN L+ + R
Sbjct:   65 TTADRRTACNCLKNAAR 81

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.418e-11
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            C+K AA  I  +N   A GLP  CGV+IPYKIS STDC+ V+
Sbjct:   79 CIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120

HSP 2 Score: 34.2686 bits (77), Expect = 2.418e-11
Identity = 15/28 (53.57%), Postives = 18/28 (64.29%), Query Frame = 3

Query:    3 TGSLAPCIVYLR--SGGPIPVPCCNGVR 80
            T SLAPCI YLR    G +P  CC G++
Sbjct:   34 TNSLAPCINYLRGSGAGAVPPGCCTGIK 61

HSP 3 Score: 20.7866 bits (42), Expect = 2.418e-11
Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1

Query:  100 RTTPDRQTACNLLEAS 147
            +TTP RQ AC  ++++
Sbjct:   68 QTTPVRQAACRCIKSA 83

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.437e-11
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 2

Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            C+K AA  I  +N   A GLP  CGV+IPYKIS STDC+ V+
Sbjct:   75 CIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116

HSP 2 Score: 34.2686 bits (77), Expect = 2.437e-11
Identity = 15/28 (53.57%), Postives = 18/28 (64.29%), Query Frame = 3

Query:    3 TGSLAPCIVYLR--SGGPIPVPCCNGVR 80
            T SLAPCI YLR    G +P  CC G++
Sbjct:   30 TNSLAPCINYLRGSGAGAVPPGCCTGIK 57

HSP 3 Score: 20.7866 bits (42), Expect = 2.437e-11
Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1

Query:  100 RTTPDRQTACNLLEAS 147
            +TTP RQ AC  ++++
Sbjct:   64 QTTPVRQAACRCIKSA 79

[Close]

BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.748e-11
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 2

Query:  119 KLHATCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            K   TCLK AA +I  ++ N A G+P  C V+IPYKIS STDCS V+
Sbjct:   68 KTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114

HSP 2 Score: 30.8018 bits (68), Expect = 4.748e-11
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 3

Query:    3 TGSLAPCIVYLRSGGPIPVPCCNGVR 80
            T  LAPC+ YL+  GP+   CC GV+
Sbjct:   31 TAGLAPCLPYLQGRGPLG-GCCGGVK 55

The following BLAST results are available for this feature:

BLAST of CK739857 vs. ExPASy Swiss-Prot

BLAST of CK739857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34


Match Name	E-value	Identity	Description
NLTP2_SOLPN	6.754e-12	60.47	Non-specific lipid-transfer protein 2 OS=Solanum p...	[more]
NLTP2_ORYSI	1.453e-11	63.41	Non-specific lipid-transfer protein 2 OS=Oryza sat...	[more]
NLT2B_ORYSJ	1.453e-11	63.41	Non-specific lipid-transfer protein 2B OS=Oryza sa...	[more]
NLT2A_ORYSJ	1.453e-11	63.41	Non-specific lipid-transfer protein 2A OS=Oryza sa...	[more]
NLTP3_PRUDU	1.865e-11	59.09	Non-specific lipid-transfer protein 3 OS=Prunus du...	[more]
NLTP1_ORYSJ	1.886e-11	58.54	Non-specific lipid-transfer protein 1 OS=Oryza sat...	[more]
NLTP1_ORYSI	1.886e-11	58.54	Non-specific lipid-transfer protein 1 OS=Oryza sat...	[more]
NLTP2_GOSHI	2.418e-11	57.14	Non-specific lipid-transfer protein OS=Gossypium h...	[more]
NLTP1_GOSHI	2.437e-11	57.14	Non-specific lipid-transfer protein OS=Gossypium h...	[more]
NLTP1_SOLPN	4.748e-11	55.32	Non-specific lipid-transfer protein 1 OS=Solanum p...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6248 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739857 ID=CK739857; Name=CK739857; organism=Citrus sinensis; type=EST; length=407bp
TGACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCT
ATACCTGTGCCATGCTGCAACGGCGTCAGGGTCTCTCAACGCTGCCGCCA
GAACCACACCTGACCGCCAAACTGCATGCAACTTGCTTGAAGCAAGCCGC
CGGATCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAG
CTTGTGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCT
AAGGTCCGGTGAACAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGA
CGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGAATTAT
GAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTC
ATGTTGT