CK739857

Overview
NameCK739857
Unique NameCK739857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3300 contig Csv1_Contig3300:320..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.748e-11
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 2
Query:  119 KLHATCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            K   TCLK AA +I  ++ N A G+P  C V+IPYKIS STDCS V+
Sbjct:   68 KTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          

HSP 2 Score: 30.8018 bits (68), Expect = 4.748e-11
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 3
Query:    3 TGSLAPCIVYLRSGGPIPVPCCNGVR 80
            T  LAPC+ YL+  GP+   CC GV+
Sbjct:   31 TAGLAPCLPYLQGRGPLG-GCCGGVK 55          
BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 43.8986 bits (102), Expect = 6.165e-11
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 2
Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 256
            CLK    +   +N NNA  LP  CG+SI YKI+ + DCSK+
Sbjct:   75 CLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          

HSP 2 Score: 42.3578 bits (98), Expect = 6.165e-11
Identity = 16/26 (61.54%), Postives = 18/26 (69.23%), Query Frame = 3
Query:    3 TGSLAPCIVYLRSGGPIPVPCCNGVR 80
            T  L PC  YL +GGP+P  CCNGVR
Sbjct:   32 TSGLVPCFGYLAAGGPVPPACCNGVR 57          
BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 7.986e-11
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 2
Query:  134 CLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 259
            CL+ AA ++ P LN   A GLP AC V+IPYKIS ST+C+ VR
Sbjct:   76 CLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          

HSP 2 Score: 35.039 bits (79), Expect = 7.986e-11
Identity = 14/24 (58.33%), Postives = 16/24 (66.67%), Query Frame = 3
Query:    6 GSLAPCIVYLRSGGPIPVPCCNGV 77
            G+LA CI YL  G P+   CCNGV
Sbjct:   34 GNLAGCIAYLTRGAPLTQGCCNGV 57          
BLAST of CK739857 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 8.393e-11
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 2
Query:  134 CLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 256
            CL  A+ +I  +N   A GLP  CGVSIPYKIS ST+C +V
Sbjct:   50 CLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          

HSP 2 Score: 38.5058 bits (88), Expect = 8.393e-11
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 3
Query:   12 LAPCIVYLRSGGPIPVPCCNGVR 80
            +A CI YLR  GP+P  CCNGV+
Sbjct:   10 MASCINYLRGAGPLPAACCNGVK 32          
The following BLAST results are available for this feature:
BLAST of CK739857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NLTP1_SOLLC4.748e-1155.32Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP_GERHY6.165e-1148.78Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP2_ARATH7.986e-1158.14Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP3_VITSX8.393e-1156.10Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6248 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739857 ID=CK739857; Name=CK739857; organism=Citrus sinensis; type=EST; length=407bp
TGACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCT
ATACCTGTGCCATGCTGCAACGGCGTCAGGGTCTCTCAACGCTGCCGCCA
GAACCACACCTGACCGCCAAACTGCATGCAACTTGCTTGAAGCAAGCCGC
CGGATCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAG
CTTGTGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCT
AAGGTCCGGTGAACAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGA
CGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGAATTAT
GAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTC
ATGTTGT
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