CK739858

Overview
NameCK739858
Unique NameCK739858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:373..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 4.651e-20
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQVVEGMDVV+ IEKVGS SGRT+K VV  DCGQL
Sbjct:  134 VVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171

HSP 2 Score: 53.5286 bits (127), Expect = 4.651e-20
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS  NAG  TNGSQFF+CT KT WLDGK
Sbjct:  103 GILSMRNAGSNTNGSQFFICTEKTSWLDGK 132
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 7.844e-20
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+CT KT+WLDGK
Sbjct:  137 GVLSMANAGPNTNGSQFFICTIKTDWLDGK 166

HSP 2 Score: 57.3806 bits (137), Expect = 7.844e-20
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG V EGMDVVK IE  GS SG+T+K +VI DCGQL
Sbjct:  168 VVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQL 205
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 7.844e-20
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+CT KT+WLDGK
Sbjct:  137 GVLSMANAGPNTNGSQFFICTIKTDWLDGK 166

HSP 2 Score: 57.3806 bits (137), Expect = 7.844e-20
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG V EGMDVVK IE  GS SG+T+K +VI DCGQL
Sbjct:  168 VVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQL 205
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_PAPAN (Peptidyl-prolyl cis-trans isomerase A OS=Papio anubis GN=PPIA PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_PANTR (Peptidyl-prolyl cis-trans isomerase A OS=Pan troglodytes GN=PPIA PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_PANPA (Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_MACMU (Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_HYLSY (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates syndactylus GN=PPIA PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLE (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates leucogenys GN=PPIA PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
The following BLAST results are available for this feature:
BLAST of CK739858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
CYPH_BRANA4.651e-2081.58Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
PPIF_RAT7.844e-2080.00Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE7.844e-2080.00Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_PONPY7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]
PPIA_PAPAN7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Papio anu... [more]
PPIA_PANTR7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Pan trogl... [more]
PPIA_PANPA7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Pan panis... [more]
PPIA_MACMU7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Macaca mu... [more]
PPIA_HYLSY7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HYLLE7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6249 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739858 ID=CK739858; Name=CK739858; organism=Citrus sinensis; type=EST; length=248bp
GGAATCCTCTCCACGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTT
CTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACCGTTGTG
TTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGT
GGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCG
GTCAATTGTGTTAGATTTGATCATGATAATGATCGGCATATCACCAGC
back to top