CK739858

Overview
NameCK739858
Unique NameCK739858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:373..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLA (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates lar GN=PPIA PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_HUMAN (Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_GORGO (Peptidyl-prolyl cis-trans isomerase A OS=Gorilla gorilla gorilla GN=PPIA PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_CERAE (Peptidyl-prolyl cis-trans isomerase A OS=Cercopithecus aethiops GN=PPIA PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 7.873e-20
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 7.873e-20
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 1.332e-19
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.1434 bits (126), Expect = 1.332e-19
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQ+
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 1.332e-19
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 53.1434 bits (126), Expect = 1.332e-19
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQ+
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 1.733e-19
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 52.7582 bits (125), Expect = 1.733e-19
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 1.733e-19
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 52.7582 bits (125), Expect = 1.733e-19
Identity = 22/38 (57.89%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG V EGM++V+A+E+ GS +G+T+K + IADCGQ+
Sbjct:  127 VVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 1.733e-19
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 52.7582 bits (125), Expect = 1.733e-19
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 2.254e-19
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 52.373 bits (124), Expect = 2.254e-19
Identity = 22/38 (57.89%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM +V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:  127 VVFGKVKEGMSIVEAMERFGSRNGKTSKKITISDCGQL 164
The following BLAST results are available for this feature:
BLAST of CK739858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PPIA_HYLLA7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HUMAN7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Homo sapi... [more]
PPIA_GORGO7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Gorilla g... [more]
PPIA_CERAE7.873e-2090.00Peptidyl-prolyl cis-trans isomerase A OS=Cercopith... [more]
PPIA_PIG1.332e-1990.00Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]
PPIA_BOVIN1.332e-1990.00Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
PPIA_MOUSE1.733e-1990.00Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_FELCA1.733e-1990.00Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
PPIA_CRIGR1.733e-1990.00Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
PPIA_RAT2.254e-1990.00Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6249 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739858 ID=CK739858; Name=CK739858; organism=Citrus sinensis; type=EST; length=248bp
GGAATCCTCTCCACGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTT
CTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACCGTTGTG
TTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGT
GGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCG
GTCAATTGTGTTAGATTTGATCATGATAATGATCGGCATATCACCAGC
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