CK739858 | Citrus Genome Database

Overview


Name	CK739858
Unique Name	CK739858
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	248

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10954	contig	Csv1_Contig10954:373..618.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 60.8474 bits (146), Expect = 2.254e-19
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 1

Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CT KTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTVKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 2.254e-19
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2

Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

[Close]

BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 60.8474 bits (146), Expect = 2.254e-19
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 1

Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CT KTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTVKTEWLDGK 125

HSP 2 Score: 53.9138 bits (128), Expect = 2.254e-19
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 2

Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  127 VVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

[Close]

BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.928e-19
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1

Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+CT KTEWLDGK
Sbjct:  103 GVLSMANAGPNTNGSQFFLCTVKTEWLDGK 132

HSP 2 Score: 54.6842 bits (130), Expect = 2.928e-19
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 2

Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+VVEG+DVVKA+E  GS SG+  K  +IADCGQL
Sbjct:  134 VVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

[Close]

BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 6.448e-19
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1

Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125

HSP 2 Score: 50.8322 bits (120), Expect = 6.448e-19
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 2

Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGM +V+A+E  GS +G+T+K + IA+CGQL
Sbjct:  127 VVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164

[Close]

BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 4.048e-18
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 2

Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG V EGMDVVK +E  GS SG+T KPVVIA+CGQL
Sbjct:  142 VVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179

HSP 2 Score: 51.9878 bits (123), Expect = 4.048e-18
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1

Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G LS ANAG  TNGSQFF+C A T+WLDGK
Sbjct:  111 GTLSMANAGANTNGSQFFICVAPTDWLDGK 140

[Close]

BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 8.915e-18
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 2

Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG VVEGMDVVK +E +GS SG+TNK + + DCGQ+
Sbjct:  127 VVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164

HSP 2 Score: 50.447 bits (119), Expect = 8.915e-18
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1

Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GIL  ANAGP TNGSQFF+ TAKT WLD +
Sbjct:   96 GILWMANAGPNTNGSQFFITTAKTSWLDNR 125

[Close]

BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.507e-17
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1

Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAG  TNGSQFF+CTA T WLDGK
Sbjct:   96 GILSMANAGVNTNGSQFFICTAVTSWLDGK 125

HSP 2 Score: 54.299 bits (129), Expect = 1.507e-17
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 2

Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG V +G+D++K +E  GS SG+T+K + IADCGQL
Sbjct:  127 VVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164

[Close]

BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 2.545e-17
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 2

Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V+EGMDVVKAIE  GS  G  + P VIADCG++
Sbjct:  134 VVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171

HSP 2 Score: 52.7582 bits (125), Expect = 2.545e-17
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1

Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS AN G  TNGSQFF+CT KT WLDGK
Sbjct:  103 GVLSMANCGANTNGSQFFLCTVKTTWLDGK 132

[Close]

BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 4.264e-17
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 1

Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS AN+GP TNGSQFF+CT K +WLDGK
Sbjct:  204 GVLSMANSGPNTNGSQFFICTTKCDWLDGK 233

HSP 2 Score: 51.2174 bits (121), Expect = 4.264e-17
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 2

Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+VV+G +VVK +E VGS SG+  +PV+I+ CG+L
Sbjct:  235 VVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272

[Close]

BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 5.593e-17
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1

Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+CT KT WLDGK
Sbjct:  103 GVLSMANAGPNTNGSQFFLCTVKTAWLDGK 132

HSP 2 Score: 49.2914 bits (116), Expect = 5.593e-17
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 2

Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+VVEG+D+V  +E  GSSSG      +IADCGQL
Sbjct:  134 VVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171

The following BLAST results are available for this feature:

BLAST of CK739858 vs. ExPASy Swiss-Prot

BLAST of CK739858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89


Match Name	E-value	Identity	Description
PPIA_SAGOE	2.254e-19	86.67	Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ...	[more]
PPIA_AOTTR	2.254e-19	86.67	Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri...	[more]
CYP3_CAEEL	2.928e-19	83.33	Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab...	[more]
PPIA_RABIT	6.448e-19	90.00	Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag...	[more]
PPIA_DICDI	4.048e-18	73.68	Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste...	[more]
PPIA_BLAGE	8.915e-18	65.79	Peptidyl-prolyl cis-trans isomerase OS=Blattella g...	[more]
PPIA_HEMPU	1.507e-17	80.00	Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot...	[more]
CYP2_CAEEL	2.545e-17	65.79	Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab...	[more]
PPIE_SCHMA	4.264e-17	73.33	Peptidyl-prolyl cis-trans isomerase E OS=Schistoso...	[more]
CYP7_CAEEL	5.593e-17	80.00	Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6249 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739858 ID=CK739858; Name=CK739858; organism=Citrus sinensis; type=EST; length=248bp
GGAATCCTCTCCACGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTT
CTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACCGTTGTG
TTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGT
GGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCG
GTCAATTGTGTTAGATTTGATCATGATAATGATCGGCATATCACCAGC