CK739858

Overview
NameCK739858
Unique NameCK739858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:373..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 7.188e-17
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G LS ANAG  TNGSQFF+CT KT WLDGK
Sbjct:  247 GTLSMANAGSNTNGSQFFICTEKTTWLDGK 276          

HSP 2 Score: 53.1434 bits (126), Expect = 7.188e-17
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQVV GM+VV+ +E+ GS+SG+ +K VVI DCG+L
Sbjct:  278 VVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.215e-17
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+CT KT WLDG+
Sbjct:  185 GVLSMANAGPNTNGSQFFICTIKTSWLDGR 214          

HSP 2 Score: 49.2914 bits (116), Expect = 7.215e-17
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 208
            VVFGQV+EGM+VVK IE+  +  G R  K VVIADCGQL
Sbjct:  216 VVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 7.269e-17
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS AN+GP TNGSQFF+CT KT WLDGK
Sbjct:  103 GILSMANSGPNTNGSQFFICTEKTSWLDGK 132          

HSP 2 Score: 48.9062 bits (115), Expect = 7.269e-17
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+VV+G +VVKA+E VGS  G  ++ VVI DCG+L
Sbjct:  134 VVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 9.432e-17
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQV +GM VVK IEK+GS SG   K V IADCG+L
Sbjct:  152 VVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          

HSP 2 Score: 52.373 bits (124), Expect = 9.432e-17
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDG 87
            G LS ANAGP TNGSQFF+CT  T WLDG
Sbjct:  121 GCLSMANAGPNTNGSQFFICTVDTPWLDG 149          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 9.446e-17
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS AN+GP TNGSQFF+CT K +WLDGK
Sbjct:  110 GVLSMANSGPNTNGSQFFICTTKCDWLDGK 139          

HSP 2 Score: 50.0618 bits (118), Expect = 9.446e-17
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+VV+G +VVK +E VGS SG+  +PV I+ CG+L
Sbjct:  141 VVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 1.222e-16
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAG  TNGSQFF+CT KT WLD K
Sbjct:  159 GILSMANAGANTNGSQFFICTVKTAWLDNK 188          

HSP 2 Score: 52.373 bits (124), Expect = 1.222e-16
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+VVEG+DVVK IE  GS SG+T+K +++A+ G L
Sbjct:  190 VVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 7.714e-16
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICTAKTEWLDGK 125          

HSP 2 Score: 40.4318 bits (93), Expect = 7.714e-16
Identity = 17/37 (45.95%), Postives = 27/37 (72.97%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 205
            V FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:  127 VAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 2.847e-15
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+CT KT+WLDGK
Sbjct:  139 GVLSMANAGPNTNGSQFFICTIKTDWLDGK 168          

HSP 2 Score: 41.9726 bits (97), Expect = 2.847e-15
Identity = 20/28 (71.43%), Postives = 22/28 (78.57%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNK 178
            VVFG V EGMDVVK IE  GS SG+T+K
Sbjct:  170 VVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.861e-15
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+C AKTEWLDGK
Sbjct:   96 GILSMANAGPNTNGSQFFICAAKTEWLDGK 125          

HSP 2 Score: 40.4318 bits (93), Expect = 2.861e-15
Identity = 17/37 (45.95%), Postives = 27/37 (72.97%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 205
            V FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:  127 VAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 4.832e-15
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V  G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:  125 VVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          

HSP 2 Score: 47.3654 bits (111), Expect = 4.832e-15
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 1
Query:    4 ILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            +LS ANAG  TNGSQFF+ TA T WLDGK
Sbjct:   95 MLSMANAGKNTNGSQFFITTAVTSWLDGK 123          
The following BLAST results are available for this feature:
BLAST of CK739858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PPIE_RHIOR7.188e-1776.67Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
CP20B_ARATH7.215e-1776.67Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
CP19C_ARATH7.269e-1780.00Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
CYP1_CAEEL9.432e-1768.42Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIE_SCHJA9.446e-1773.33Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PPIA_DROME1.222e-1676.67Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PAL4A_HUMAN7.714e-1690.00Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIF_BOVIN2.847e-1580.00Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PAL4B_HUMAN2.861e-1586.67Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
PPIA_ECHGR4.832e-1565.79Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6249 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739858 ID=CK739858; Name=CK739858; organism=Citrus sinensis; type=EST; length=248bp
GGAATCCTCTCCACGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTT
CTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACCGTTGTG
TTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGT
GGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCG
GTCAATTGTGTTAGATTTGATCATGATAATGATCGGCATATCACCAGC
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