CK739858

Overview
NameCK739858
Unique NameCK739858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:373..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 6.280e-15
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+ T  T WLDGK
Sbjct:   94 GLLSMANAGPNTNGSQFFITTVVTPWLDGK 123          

HSP 2 Score: 48.521 bits (114), Expect = 6.280e-15
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 202
            VVFG+V EGMDVVK +E +GS+SG T   +VI  CG
Sbjct:  125 VVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 8.161e-15
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+   KT WLDGK
Sbjct:   94 GMLSMANAGPNTNGSQFFITVTKTPWLDGK 123          

HSP 2 Score: 47.7506 bits (112), Expect = 8.161e-15
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 2
Query:   95 VVFGQVVEGMD-VVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V+EG D VVKA+EK GS SG+T+  + I DCG L
Sbjct:  125 VVFGKVIEGYDQVVKAMEKTGSQSGKTSSVLKIEDCGTL 163          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 1.378e-14
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+ T    WLDGK
Sbjct:   94 GLLSMANAGPNTNGSQFFITTVPCPWLDGK 123          

HSP 2 Score: 49.2914 bits (116), Expect = 1.378e-14
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V +G+D+VK IE  GS SG T+K +VI + GQL
Sbjct:  125 VVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 2.297e-14
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS AN+GP TNGSQFF+   KT+WLDGK
Sbjct:  232 GLLSMANSGPNTNGSQFFLTCDKTDWLDGK 261          

HSP 2 Score: 47.7506 bits (112), Expect = 2.297e-14
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 205
            VVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  263 VVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 2.984e-14
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS AN+GP TNGSQFF+   KT+WLDGK
Sbjct:  232 GLLSMANSGPNTNGSQFFLTCDKTDWLDGK 261          

HSP 2 Score: 47.3654 bits (111), Expect = 2.984e-14
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 205
            VVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  263 VVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 3.025e-14
Identity = 21/37 (56.76%), Postives = 31/37 (83.78%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 205
            VVFG+VV G+DVVK +E +GS+SG+ +K ++I DCG+
Sbjct:  124 VVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          

HSP 2 Score: 46.595 bits (109), Expect = 3.025e-14
Identity = 20/28 (71.43%), Postives = 21/28 (75.00%), Query Frame = 1
Query:    7 LSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            LS ANAGP TNGSQFF+ T    WLDGK
Sbjct:   95 LSMANAGPNTNGSQFFITTVPCSWLDGK 122          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 3.877e-14
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS AN+GP TNGSQFF+   KT+WLDGK
Sbjct:  232 GLLSMANSGPNTNGSQFFLTCDKTDWLDGK 261          

HSP 2 Score: 46.9802 bits (110), Expect = 3.877e-14
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 205
            VVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  263 VVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 6.631e-14
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G LS ANAGP TNGSQFF+ T K  WLDGK
Sbjct:   96 GDLSMANAGPNTNGSQFFITTIKCSWLDGK 125          

HSP 2 Score: 46.595 bits (109), Expect = 6.631e-14
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V EGMDVV+ IE +GS +G     ++I +CGQL
Sbjct:  127 VVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 8.595e-14
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+ T    WLDGK
Sbjct:  114 GLLSMANAGPNTNGSQFFITTVPCPWLDGK 143          

HSP 2 Score: 46.595 bits (109), Expect = 8.595e-14
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V +GMD+VKAIE  G++SG+    +VI + G+L
Sbjct:  145 VVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.435e-13
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS AN+GP TNGSQFF+   KT+WLDGK
Sbjct:  232 GLLSMANSGPNTNGSQFFLTCDKTDWLDGK 261          

HSP 2 Score: 45.0542 bits (105), Expect = 1.435e-13
Identity = 17/37 (45.95%), Postives = 28/37 (75.68%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 205
            VVFG++ +G+DV++ IE  GS  G+  + V+I+DCG+
Sbjct:  263 VVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
The following BLAST results are available for this feature:
BLAST of CK739858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
CYPH_SCHPO6.280e-1573.33Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
CYPH_UROFA8.161e-1573.33Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa... [more]
PPIA_CANAL1.378e-1470.00Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
PPIE_HUMAN2.297e-1470.00Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIE_PONAB2.984e-1470.00Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIA_SCHMA3.025e-1456.76Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
PPIE_MOUSE3.877e-1470.00Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PPIA1_RHIOR6.631e-1473.33Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
CYPC_YEAST8.595e-1470.00Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPIE_BOVIN1.435e-1370.00Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6249 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739858 ID=CK739858; Name=CK739858; organism=Citrus sinensis; type=EST; length=248bp
GGAATCCTCTCCACGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTT
CTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACCGTTGTG
TTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGT
GGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCG
GTCAATTGTGTTAGATTTGATCATGATAATGATCGGCATATCACCAGC
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