CK739858

Overview
NameCK739858
Unique NameCK739858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.448e-13
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+ T  T WLDG+
Sbjct:  129 GLLSMANAGPNTNGSQFFITTVVTSWLDGR 158

HSP 2 Score: 44.669 bits (104), Expect = 1.448e-13
Identity = 19/37 (51.35%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:   98 VFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VFG+V+EGMD+VK +E +GS SG  +K   I++ G+L
Sbjct:  161 VFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 49.2914 bits (116), Expect = 1.454e-13
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+ T    WLDGK
Sbjct:   94 GLLSMANAGPNTNGSQFFITTVPCPWLDGK 123

HSP 2 Score: 45.8246 bits (107), Expect = 1.454e-13
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+VV+G D+VK +E +GS SG T   +V+A  G+L
Sbjct:  125 VVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.887e-13
Identity = 19/38 (50.00%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+VVEG+++++ +E  GS SG+T + +VI+DCG++
Sbjct:  133 VVFGEVVEGLEILEQLEANGSQSGQTKQAIVISDCGEI 170

HSP 2 Score: 45.8246 bits (107), Expect = 1.887e-13
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+      WLDGK
Sbjct:  102 GLLSMANAGPNTNGSQFFLTFVPCPWLDGK 131
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 2.442e-13
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAG  TNGSQFF+ T  T WLDG+
Sbjct:  122 GILSMANAGRDTNGSQFFITTVTTSWLDGR 151

HSP 2 Score: 46.595 bits (109), Expect = 2.442e-13
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 208
            VVFG+V+EGMDVV AIE   +  G R   PV+IADCG+L
Sbjct:  153 VVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 3.145e-13
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G LS AN+G  TNGSQFF+CT KT+WLD K
Sbjct:  231 GTLSMANSGANTNGSQFFICTTKTDWLDNK 260

HSP 2 Score: 42.743 bits (99), Expect = 3.145e-13
Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG V+ G +VV+ +E+ GS SG  ++ +VI  CG+L
Sbjct:  262 VVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB2_RHIOR (Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus oryzae GN=cyp9 PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.172e-12
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP +NGSQFF+ T  T WLDGK
Sbjct:  126 GLLSMANAGPDSNGSQFFITTVVTSWLDGK 155

HSP 2 Score: 42.3578 bits (98), Expect = 1.172e-12
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 208
            VVFG+V+EGMDVV  IEK  ++   + N  VVIADCG L
Sbjct:  157 VVFGKVLEGMDVVTKIEKTPTNYRSKPNVDVVIADCGLL 195
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 46.595 bits (109), Expect = 1.523e-12
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS AN+G  TNGSQFF+ T  T WLDG+
Sbjct:  131 GVLSMANSGEDTNGSQFFITTVTTSWLDGR 160

HSP 2 Score: 45.0542 bits (105), Expect = 1.523e-12
Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+VV+GMDVV  IE  G  SG     VVIAD G+L
Sbjct:  162 VVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 199
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 3.329e-12
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFFV T  T WLDG+
Sbjct:  151 GLLSMANAGPNTNGSQFFVTTVPTSWLDGR 180

HSP 2 Score: 39.2762 bits (90), Expect = 3.329e-12
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 2 
Query:   95 VVFGQVV--EGMDVVKAIEKVGSSSG--RTNKPVVIADCGQL 208
            VVFG+V   E M VVKA+E  GSSSG  R +K   I DCG L
Sbjct:  182 VVFGEVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCGAL 223
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 3.355e-12
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDG 87
            G+LS ANAGP TNGSQFF+ T    WLDG
Sbjct:   93 GLLSMANAGPNTNGSQFFITTVPCSWLDG 121

HSP 2 Score: 42.743 bits (99), Expect = 3.355e-12
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V + M++V  IE +GS+SG     VVI DCG L
Sbjct:  124 VVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCGVL 161
[Close]
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 5.608e-12
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAG  TNGSQFF+CT KT WLD +
Sbjct:  143 GVLSMANAGRDTNGSQFFICTVKTAWLDNR 172

HSP 2 Score: 38.891 bits (89), Expect = 5.608e-12
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 208
            VVFG V+EGMDVV A+E V +S G +  +P+ IA  G+L
Sbjct:  174 VVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGEL 212
The following BLAST results are available for this feature:
BLAST of CK739858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PPIB_DICDI1.448e-1370.00Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
CYPH_YEAST1.454e-1370.00Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
PPI2_SYNY31.887e-1350.00Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
PPIB_ORPSP2.442e-1370.00Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIE_DROME3.145e-1370.00Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPIB2_RHIOR1.172e-1270.00Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus... [more]
CP19D_ARATH1.523e-1263.33Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
CYPH_NEUCR3.329e-1273.33Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA2_RHIOR3.355e-1268.97Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
PPIB_CRYNE5.608e-1270.00Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6249 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739858 ID=CK739858; Name=CK739858; organism=Citrus sinensis; type=EST; length=248bp
GGAATCCTCTCCACGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTT
CTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACCGTTGTG
TTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGT
GGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCG
GTCAATTGTGTTAGATTTGATCATGATAATGATCGGCATATCACCAGC
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