CK739858

Overview
NameCK739858
Unique NameCK739858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:373..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 7.334e-12
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS AN G  TNGSQFF+   KT+WLD K
Sbjct:   99 GILSMANCGAHTNGSQFFITLGKTQWLDEK 128          

HSP 2 Score: 44.2838 bits (103), Expect = 7.334e-12
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNK--PVVIADCGQL 208
            VVFG+VVEGMDVV  I K GS SG+  K   + I DCG L
Sbjct:  130 VVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 169          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 9.483e-12
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G LS ANAG  TNGSQFF+ T  T WLDG+
Sbjct:  134 GFLSMANAGQDTNGSQFFITTVTTSWLDGR 163          

HSP 2 Score: 42.3578 bits (98), Expect = 9.483e-12
Identity = 21/38 (55.26%), Postives = 25/38 (65.79%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+VV GMDVV  +E  G+ SG     VVI D G+L
Sbjct:  165 VVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 9.527e-12
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGPGTNGSQFF+ T  T  LDGK
Sbjct:  100 GLLSMANAGPGTNGSQFFITTVATPHLDGK 129          

HSP 2 Score: 40.0466 bits (92), Expect = 9.527e-12
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 208
            VVFG+VVEGMDVV+ IE   + + R +KP   V IA CGQL
Sbjct:  131 VVFGKVVEGMDVVRKIE--ATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.230e-11
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G LS ANAGP TNGSQFF+ T KT WLDGK
Sbjct:  129 GWLSMANAGPDTNGSQFFITTVKTSWLDGK 158          

HSP 2 Score: 36.5798 bits (83), Expect = 1.230e-11
Identity = 19/39 (48.72%), Postives = 26/39 (66.67%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 208
            VVFG+VVEGM++V+ IE +   S  R  K + IA CG +
Sbjct:  160 VVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 47.7506 bits (112), Expect = 2.073e-11
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G +S ANAG  TNGSQFF+ T KT WLDGK
Sbjct:  136 GWVSMANAGKDTNGSQFFITTVKTSWLDGK 165          

HSP 2 Score: 40.0466 bits (92), Expect = 2.073e-11
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 208
            VVFG+V+EGMDVV+ +E   + S  +  K V+I DCG++
Sbjct:  167 VVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGKI 205          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 2.075e-11
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAG  TNGSQFF+ T  T WLDGK
Sbjct:  126 GLLSMANAGRDTNGSQFFITTVVTPWLDGK 155          

HSP 2 Score: 40.4318 bits (93), Expect = 2.075e-11
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 208
            VVFG+V+EGMDVV  IE   + +G  +KP   VVIADCG L
Sbjct:  157 VVFGRVLEGMDVVTKIE--NTPTGSRSKPSVDVVIADCGLL 195          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 2.084e-11
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDG 87
            G+LS ANAGP TNGSQFF+   KT WLDG
Sbjct:  106 GVLSMANAGPNTNGSQFFITFDKTPWLDG 134          

HSP 2 Score: 38.891 bits (89), Expect = 2.084e-11
Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 2
Query:   98 VFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VFGQ+VEG  V++ +E+ G+ SG     V I DCG++
Sbjct:  138 VFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 2.655e-11
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 1
Query:    4 ILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            +LS ANAGPGTNGSQFFV T  T  LDGK
Sbjct:  112 LLSMANAGPGTNGSQFFVTTVPTPHLDGK 140          

HSP 2 Score: 40.4318 bits (93), Expect = 2.655e-11
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V+ G  VV+ IE + +   +  K  VIADCG+L
Sbjct:  142 VVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGEL 179          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 2.691e-11
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G +S ANAG  TNGSQFF+ T KT WLDGK
Sbjct:  136 GWVSMANAGKDTNGSQFFITTVKTAWLDGK 165          

HSP 2 Score: 40.0466 bits (92), Expect = 2.691e-11
Identity = 19/39 (48.72%), Postives = 29/39 (74.36%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 208
            VVFG+V+EGM+VV+ +E   + S  +  K V+IADCG++
Sbjct:  167 VVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 205          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 3.482e-11
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+CT  T WLD +
Sbjct:  174 GVLSMANAGPNTNGSQFFICTVPTPWLDNR 203          

HSP 2 Score: 34.6538 bits (78), Expect = 3.482e-11
Identity = 19/40 (47.50%), Postives = 24/40 (60.00%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSS--SGRTNKPVVIADCGQL 208
            VVFG V+EG+DVVK +E   +S       KP  IA  G+L
Sbjct:  205 VVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGEL 244          
The following BLAST results are available for this feature:
BLAST of CK739858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
CYPH_ENCCU7.334e-1266.67Peptidyl-prolyl cis-trans isomerase OS=Encephalito... [more]
CP20A_ARATH9.483e-1266.67Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CYPX_USEUD9.527e-1273.33Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPIB_SCHMA1.230e-1176.67Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_RAT2.073e-1170.00Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIB1_RHIOR2.075e-1170.00Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
CYP5_RHIOR2.084e-1172.41Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPID_NEUCR2.655e-1175.8641 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIB_HUMAN2.691e-1170.00Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
CYPB_VICFA3.482e-1170.00Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6249 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739858 ID=CK739858; Name=CK739858; organism=Citrus sinensis; type=EST; length=248bp
GGAATCCTCTCCACGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTT
CTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACCGTTGTG
TTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGT
GGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCG
GTCAATTGTGTTAGATTTGATCATGATAATGATCGGCATATCACCAGC
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