CK739858

Overview
NameCK739858
Unique NameCK739858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:373..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 47.3654 bits (111), Expect = 3.493e-11
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G +S ANAG  TNGSQFF+ T KT WLDGK
Sbjct:  136 GWVSMANAGKDTNGSQFFITTVKTAWLDGK 165          

HSP 2 Score: 39.6614 bits (91), Expect = 3.493e-11
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTN--KPVVIADCGQL 208
            VVFG+V+EGMDVV+ +E    + GR    K V IADCG++
Sbjct:  167 VVFGKVLEGMDVVRKVEST-KTDGRDKPLKDVTIADCGKI 205          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 3.497e-11
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G +S ANAG  TNGSQFF+ T KT WLDGK
Sbjct:  127 GWVSMANAGKDTNGSQFFITTVKTAWLDGK 156          

HSP 2 Score: 39.6614 bits (91), Expect = 3.497e-11
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 208
            VVFG+V+EGMDVV+ +E   + S  +  K V IADCG +
Sbjct:  158 VVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTI 196          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 3.500e-11
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G LS ANAG  TNGSQFF+ TAKT WLDGK
Sbjct:  118 GWLSMANAGEDTNGSQFFITTAKTSWLDGK 147          

HSP 2 Score: 36.5798 bits (83), Expect = 3.500e-11
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 208
            VVFG+++EGMDVV+ IE     +G R  + VVIA+ G +
Sbjct:  149 VVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 44.2838 bits (103), Expect = 3.508e-11
Identity = 18/38 (47.37%), Postives = 28/38 (73.68%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQV++GMD+V+ IE   ++  + N+ VVI  CG++
Sbjct:  146 VVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          

HSP 2 Score: 42.743 bits (99), Expect = 3.508e-11
Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS AN+GP TNG QFF+ T  T +L+GK
Sbjct:  115 GLLSMANSGPNTNGCQFFITTTATPFLNGK 144          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.511e-11
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G++S ANAGP TNGSQFF+ T KTEWLDG+
Sbjct:  109 GVISMANAGPNTNGSQFFITTVKTEWLDGR 138          

HSP 2 Score: 32.3426 bits (72), Expect = 3.511e-11
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = 2
Query:   95 VVFGQVV-EGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG++  +    V+AIE +GSS GR +K   I D G L
Sbjct:  140 VVFGKITNDSWPTVQAIEALGSSGGRPSKIAKITDIGLL 178          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 4.566e-11
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAG  TNGSQFF+ T  T WLDGK
Sbjct:   95 GLLSMANAGKNTNGSQFFITTVLTPWLDGK 124          

HSP 2 Score: 38.5058 bits (88), Expect = 4.566e-11
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 2
Query:   95 VVFGQVVE--GMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V +   M +V+ IE +GSSSGRT+  V IA+ G L
Sbjct:  126 VVFGEVADDDSMALVRKIEALGSSSGRTSAKVTIAESGAL 165          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 5.919e-11
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDG 87
            G+LS ANAGP TNGSQFF+    T WLDG
Sbjct:  106 GLLSMANAGPNTNGSQFFITFVDTPWLDG 134          

HSP 2 Score: 39.2762 bits (90), Expect = 5.919e-11
Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 2
Query:   98 VFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VFGQ+V+G  V+  +E+ GS SG  +  + I DCG+L
Sbjct:  138 VFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGEL 174          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 43.1282 bits (100), Expect = 7.541e-11
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQL 208
            VVFG+V++G  VV+ IE   +++G   K PVVIADCGQL
Sbjct:  135 VVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQL 173          

HSP 2 Score: 42.743 bits (99), Expect = 7.541e-11
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 1
Query:    4 ILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            +LS ANAGP TNGSQFF+  + T  LDGK
Sbjct:  105 LLSMANAGPNTNGSQFFITVSATPHLDGK 133          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 9.923e-11
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G LS ANAGP TNG+QFF+ T +  WLDGK
Sbjct:  129 GWLSMANAGPNTNGAQFFITTTQNPWLDGK 158          

HSP 2 Score: 38.1206 bits (87), Expect = 9.923e-11
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 208
            VVFG+VVEGM VV+ IE + + S  R  K V IA+CG +
Sbjct:  160 VVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
The following BLAST results are available for this feature:
BLAST of CK739858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PPIB_BOVIN3.493e-1170.00Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIB_CHICK3.497e-1170.00Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
CYP6_CAEEL3.500e-1176.67Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPIH_EMENI3.508e-1147.37Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
PPIA_NEOCA3.511e-1173.33Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
PPIA_STRCH4.566e-1170.00Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]
CYP6_RHIOR5.919e-1168.97Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPID_AMAMU7.541e-1156.41Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPIB_SCHJA9.923e-1166.67Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6249 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739858 ID=CK739858; Name=CK739858; organism=Citrus sinensis; type=EST; length=248bp
GGAATCCTCTCCACGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTT
CTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACCGTTGTG
TTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGT
GGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCG
GTCAATTGTGTTAGATTTGATCATGATAATGATCGGCATATCACCAGC
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