CK739869

Overview
NameCK739869
Unique NameCK739869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:388..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.160e-26
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++     +++L+G  E YR+  G
Sbjct:   63 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGG 178

HSP 2 Score: 36.5798 bits (83), Expect = 7.160e-26
Identity = 14/20 (70.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPDQ 453
            D L+PGG FDPLGLA+DP++
Sbjct:  185 DPLYPGGSFDPLGLAEDPER 204
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.178e-26
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G
Sbjct:   36 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGG 151

HSP 2 Score: 36.965 bits (84), Expect = 7.178e-26
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            DK++PGG FDPLGLA DP+
Sbjct:  158 DKIYPGGAFDPLGLADDPE 176
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.317e-26
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G
Sbjct:   66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 181

HSP 2 Score: 35.4242 bits (80), Expect = 9.317e-26
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA DP+
Sbjct:  188 DPLYPGGSFDPLGLADDPE 206
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.317e-26
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G
Sbjct:   64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGG 179

HSP 2 Score: 35.4242 bits (80), Expect = 9.317e-26
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA DP+
Sbjct:  186 DPLYPGGTFDPLGLADDPE 204
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.317e-26
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G
Sbjct:   66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGG 181

HSP 2 Score: 35.4242 bits (80), Expect = 9.317e-26
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA DP+
Sbjct:  188 DPLYPGGSFDPLGLADDPE 206
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.317e-26
Identity = 55/120 (45.83%), Postives = 73/120 (60.83%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 380
            + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G
Sbjct:   64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAIWACQVVLMGFVEGYRVGGG 179

HSP 2 Score: 36.965 bits (84), Expect = 9.317e-26
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            DK++PGG FDPLGLA DP+
Sbjct:  186 DKIYPGGAFDPLGLADDPE 204
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.317e-26
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + AV A ++VL+G  E YR+  G
Sbjct:   64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGG 179

HSP 2 Score: 36.965 bits (84), Expect = 9.317e-26
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            DK++PGG FDPLGLA DP+
Sbjct:  186 DKIYPGGAFDPLGLADDPE 204
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.317e-26
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            +IP YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G   PE   K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G
Sbjct:   64 QIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGG 179

HSP 2 Score: 36.965 bits (84), Expect = 9.317e-26
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA DPD
Sbjct:  186 DPLYPGGAFDPLGLADDPD 204
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.578e-25
Identity = 53/117 (45.30%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G
Sbjct:   65 EAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180

HSP 2 Score: 35.4242 bits (80), Expect = 1.578e-25
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA DP+
Sbjct:  187 DPLYPGGSFDPLGLADDPE 205
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.054e-25
Identity = 53/117 (45.30%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+G  E YR+  G
Sbjct:   67 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 182

HSP 2 Score: 36.1946 bits (82), Expect = 2.054e-25
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D ++PGG FDPLGLA DPD
Sbjct:  189 DPIYPGGSFDPLGLADDPD 207
The following BLAST results are available for this feature:
BLAST of CK739869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB23_APIGR7.160e-2642.74Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC7.178e-2645.30Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2A_SPIOL9.317e-2645.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE9.317e-2646.15Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB27_TOBAC9.317e-2645.30Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_SOLLC9.317e-2645.83Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC9.317e-2646.15Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB215_PEA9.317e-2646.15Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_PETSP1.578e-2545.30Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA2.054e-2545.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6260 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739869 ID=CK739869; Name=CK739869; organism=Citrus sinensis; type=EST; length=454bp
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCT
CAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTC
ATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCC
TTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGAC
TGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACA
TCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGT
GGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTTGGAGGACAAGC
TTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCTGAC
CAAT
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