CK739869

Overview
NameCK739869
Unique NameCK739869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:388..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.054e-25
Identity = 51/115 (44.35%), Postives = 70/115 (60.87%), Query Frame = 3 
Query:   45 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            P YL+GE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G
Sbjct:   66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 179

HSP 2 Score: 36.965 bits (84), Expect = 2.054e-25
Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 1 
Query:  388 LEDKLHPGGPFDPLGLAKDPD 450
            +ED ++PGG FDPLGLA DP+
Sbjct:  184 VEDPIYPGGSFDPLGLADDPE 204
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.054e-25
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDFG 392
            E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+      G
Sbjct:   65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 184

HSP 2 Score: 36.965 bits (84), Expect = 2.054e-25
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  391 EDKLHPGGPFDPLGLAKDPD 450
            ED L+PGG FDPLGLA DP+
Sbjct:  187 EDLLYPGGSFDPLGLATDPE 206
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.054e-25
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDFG 392
            E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+      G
Sbjct:   65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 184

HSP 2 Score: 36.965 bits (84), Expect = 2.054e-25
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  391 EDKLHPGGPFDPLGLAKDPD 450
            ED L+PGG FDPLGLA DP+
Sbjct:  187 EDLLYPGGSFDPLGLATDPE 206
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.062e-25
Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G
Sbjct:   27 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 142

HSP 2 Score: 32.7278 bits (73), Expect = 2.062e-25
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA+ P+
Sbjct:  149 DPLYPGGSFDPLGLAEVPE 167
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.691e-25
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YRI  G
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 120

HSP 2 Score: 34.6538 bits (78), Expect = 2.691e-25
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D ++PGG FDPLGLA DP+
Sbjct:  127 DPIYPGGSFDPLGLADDPE 145
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.895e-25
Identity = 52/117 (44.44%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D   LS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G
Sbjct:   66 EAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181

HSP 2 Score: 35.4242 bits (80), Expect = 5.895e-25
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA DP+
Sbjct:  188 DPLYPGGSFDPLGLADDPE 206
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.895e-25
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 371
            E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+
Sbjct:   64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 176

HSP 2 Score: 36.965 bits (84), Expect = 5.895e-25
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  391 EDKLHPGGPFDPLGLAKDPD 450
            ED L+PGG FDPLGLA DP+
Sbjct:  186 EDLLYPGGSFDPLGLATDPE 205
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.300e-24
Identity = 53/117 (45.30%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L Y G    +    + A+ A ++VL+G  E YR+  G
Sbjct:   63 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 178

HSP 2 Score: 32.3426 bits (72), Expect = 1.300e-24
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA D +
Sbjct:  185 DPLYPGGSFDPLGLADDAE 203
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.695e-24
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    I    + A+ A +++L+G  E YRI  G
Sbjct:   44 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGG 159

HSP 2 Score: 32.3426 bits (72), Expect = 1.695e-24
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D ++PGG FDPL LA DP+
Sbjct:  166 DPIYPGGSFDPLALADDPE 184
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.851e-24
Identity = 52/117 (44.44%), Postives = 68/117 (58.12%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    +   +L+     ++VL+G  E YRI  G
Sbjct:   65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGG 180

HSP 2 Score: 32.3426 bits (72), Expect = 4.851e-24
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDP 447
            D L+PGG FDPLGLA+ P
Sbjct:  187 DPLYPGGSFDPLGLAERP 204
The following BLAST results are available for this feature:
BLAST of CK739869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB23_POLMU2.054e-2544.35Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_ARATH2.054e-2542.15Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.054e-2542.15Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_PEA2.062e-2545.30Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_CUCSA2.691e-2545.30Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB25_PETSP5.895e-2544.44Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_SINAL5.895e-2543.86Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_HORVU1.300e-2445.30Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN1.695e-2445.30Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_WHEAT4.851e-2444.44Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6260 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739869 ID=CK739869; Name=CK739869; organism=Citrus sinensis; type=EST; length=454bp
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCT
CAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTC
ATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCC
TTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGAC
TGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACA
TCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGT
GGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTTGGAGGACAAGC
TTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCTGAC
CAAT
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