CK739871

Overview
NameCK739871
Unique NameCK739871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:972..1293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.018e-23
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 2
Query:   17 ALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLI-MPAGLPGACGVSIPYK 325
            A+ ++ A V CM+V  P + +A++CGQV  SLAPCI +L  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A   N ++       A  PG CGVSIPYK
Sbjct:    5 AMMVLCAGVTCMVVGAPYT-EALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSA--YNSISGVNAGNAASFPGKCGVSIPYK 105          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.737e-23
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 2
Query:   17 ALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLR--SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPYK 325
            +LKL   +VLCM+V  PL+  A+T GQV  SLAPCI +LR    G +P  CC G++SLN+AA+TTP RQ AC C+K A           + +GLPG CGV+IPYK
Sbjct:    6 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSA-AAGITGINFGLASGLPGKCGVNIPYK 109          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.737e-23
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 2
Query:   17 ALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLR--SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPYK 325
            +LKL   +VLCM+V  PL+  A+T GQV  SLAPCI +LR    G +P  CC G++SLN+AA+TTP RQ AC C+K A           + +GLPG CGV+IPYK
Sbjct:    2 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSA-AAGITGINFGLASGLPGKCGVNIPYK 105          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.268e-23
Identity = 53/108 (49.07%), Postives = 69/108 (63.89%), Query Frame = 2
Query:   14 AALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLK----QARQINPLASTLIMPAGLPGACGVSIPYK 325
            A +KL   + LCM V+    A AITC QV  +LAPCI ++RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK        +NP  +       LPG CGV++PYK
Sbjct:    5 AVIKLALVVALCMAVS---VAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNA-----ESLPGKCGVNVPYK 104          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.869e-23
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 2
Query:   20 LKLVSALVLCMLVTGPLSA-QAITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPY 322
            +KL   ++ CM+V GP++A +A+TCG V  ++APCIG++  GG +P  CC GV  LN+ ARTTPDRQ AC CL+ A +           AG+P ACGVS+P+
Sbjct:    5 MKLACLVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPF 106          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.869e-23
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 2
Query:   83 ITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQ----ARQINPLASTLIMPAGLPGACGVSIPYK 325
            ITCGQV  SLAPCIG++R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ       +NP  +     A LPG CGV+IPYK
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNA-----AALPGKCGVNIPYK 80          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.599e-23
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 2
Query:   17 ALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQ-ARQINPLASTLIMPAGLPGACGVSIPY 322
            AL+  +  VL + +   + A AITCG V  SL+PC+G+L  GG +P PCC GV+ LN  A+TTPDRQ AC CL+  A+ +NP      + +GLPG CGVSIPY
Sbjct:    4 ALRFFTCFVLTVFIVASVDA-AITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNP-----SLASGLPGKCGVSIPY 100          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.599e-23
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    8 QMAALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLI-MPAGLPGACGVSIPYK 325
            Q+  L  + A++ CM V GP +  A++CGQV  +L PCI ++ +GG +   CC GVRSL + A+TT DRQ+ CNCLKQA    P  +    + AGLPG CGV+IPYK
Sbjct:    6 QLLKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYK 112          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.126e-22
Identity = 56/105 (53.33%), Postives = 67/105 (63.81%), Query Frame = 2
Query:   11 MAALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINP-LASTLIMPAGLPGACGVSIPY 322
            MA    V  L+L   + G  +A AITCGQV   L  C+G+ R GG IP  CC GVR+LN  A+TTPDRQTACNCLK    +NP L     + AG+PG CGV+IPY
Sbjct:    1 MARSSAVCFLLLLAFLIG--TASAITCGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSL--VNPSLGLNAAIVAGIPGKCGVNIPY 101          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.126e-22
Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 2
Query:   20 LKLVSALVLCMLVTGPLSAQA-ITCGQVRGSLAPCIGFLRSGGP-IPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPYK 325
            +KL   +  CM+V GP+++ A ++CG V G +APCIG+L    P +P  CC+GV SLN  ARTTPDRQ AC CL  A    P  + +   AGLP ACGV+IPYK
Sbjct:    5 MKLACLIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTIN-VARAAGLPKACGVNIPYK 107          
The following BLAST results are available for this feature:
BLAST of CK739871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
NLTP_HELAN1.018e-2352.88Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP2_GOSHI1.737e-2351.43Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI1.737e-2351.43Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_PYRCO2.268e-2349.07Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTPA_BRAOT3.869e-2348.04Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP1_PRUAR3.869e-2360.00Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP4_ARATH6.599e-2350.49Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP3_PRUDU6.599e-2348.60Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
SCA_LILLO1.126e-2253.33Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTPD_BRAOT1.126e-2250.96Non-specific lipid-transfer protein D OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6263 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739871 ID=CK739871; Name=CK739871; organism=Citrus sinensis; type=EST; length=325bp
GAAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCA
TGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTG
AGAGGCTCATTGGCACCATGCATCGGTTTCTTGAGATCGGGCGGCCCTAT
ACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAA
CCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCCGCCAG
ATCAATCCCCTAGCCTCAACCTTAATAATGCCTGCTGGTCTTCCAGGAGC
TTGTGGAGTCAGCATTCCTTACAAG
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