CK739872

Overview
NameCK739872
Unique NameCK739872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:595..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 2.492e-53
Identity = 94/164 (57.32%), Postives = 122/164 (74.39%), Query Frame = 3
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W  M   ER R++ + ADLIE++   LA +E+ N GK Y  +  +++   ++ L Y AGWADKI G T+P DGN+   T HEPIGV GQI+PWNFPL++  WK+ PAL+CGNT+V+K AEQTPLTAL+VA L  EAG PPGV+N+V GYGPTAGAA++SHMD+D
Sbjct:   77 WRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDID 240          
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 3.254e-53
Identity = 93/164 (56.71%), Postives = 123/164 (75.00%), Query Frame = 3
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W  M   ER R++ + ADL+E++   LA +E+ N GK +  +   ++   ++ L Y AGWADKI G T+P DGN+   T HEP+GV GQI+PWNFPLL+F WK+APAL+CGNT+V+K AEQTPL+AL+VA L  EAG PPGV+N+V GYGPTAGAA++SHMD+D
Sbjct:   76 WRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDGNFFTYTRHEPVGVCGQILPWNFPLLMFLWKIAPALSCGNTVVVKPAEQTPLSALHVATLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDID 239          
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 9.468e-53
Identity = 92/164 (56.10%), Postives = 122/164 (74.39%), Query Frame = 3
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W  M   ER R++ + ADL+E++   LA +E+ N GK +  +   +V + ++ L Y+AGWADKIHG T+P DGN    T  EPIGV GQI+PWN PL++FTWK+ PAL+CGNT+V+K AEQTPLTAL++A L  EAG PPGV+N+V GYGPTAG A++SHMD+D
Sbjct:   77 WRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQTIPSDGNIFTYTRREPIGVCGQIIPWNGPLIIFTWKLGPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGGAISSHMDID 240          
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 204.912 bits (520), Expect = 1.615e-52
Identity = 93/164 (56.71%), Postives = 121/164 (73.78%), Query Frame = 3
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W  M   ER R++ + ADL+E++   LA +E  N GK +  +  S++   ++ L Y AGWADKIHG T+P DG+    T  EPIGV GQI+PWNFP+L+F WK+ PAL+CGNT+V+K AEQTPLTAL++A L  EAG PPGV+N+V GYGPTAGAA++SHMDVD
Sbjct:   77 WRTMDASERGRLLNKLADLMERDRLLLATMEALNGGKVFANAYLSDLGGCIKALKYCAGWADKIHGQTIPSDGDIFTYTRREPIGVCGQIIPWNFPMLMFIWKIGPALSCGNTVVVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 240          
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 2.755e-52
Identity = 94/164 (57.32%), Postives = 121/164 (73.78%), Query Frame = 3
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W  M   ER R++ + ADL+E++   LA +E  N GK +  +  S++   ++ L Y AGWADKIHG T+P DG+    T  EPIGV GQI+PWNFPLL+F WK+ PAL+CGNT+V+K AEQTPLTAL++A L  EAG PPGV+N+V GYGPTAGAA++SHMDVD
Sbjct:   77 WRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANAYLSDLGGSIKALKYCAGWADKIHGQTIPSDGDIFTFTRREPIGVCGQIIPWNFPLLMFIWKIGPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 240          
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 1.786e-51
Identity = 92/164 (56.10%), Postives = 119/164 (72.56%), Query Frame = 3
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W  M   ER R++ + ADLIE++   LA +E  N GK +  +   ++   ++ L Y AGWADKI G T+P DGN+   T  EP+GV GQI+PWNFPLL+F WK+ PAL+CGNT+V+K AEQTPLTAL++  L  EAG PPGV+N+V GYGPTAGAA++SHMDVD
Sbjct:   77 WRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 240          
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.332e-51
Identity = 89/164 (54.27%), Postives = 120/164 (73.17%), Query Frame = 3
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W  M   ER R++ + ADL+E++   LA +E  + GK +  +   ++   ++ + Y AGWADKIHG TVP DGN+   T HEP+GV GQI+PWNFPL++F WK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N+V G+GPTAGAA++ HMD+D
Sbjct:   85 WRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGWADKIHGRTVPMDGNFFTFTRHEPVGVCGQIIPWNFPLVMFIWKIAPALCCGNTVVVKPAEQTPLSALYMGSLIKEAGFPPGVVNIVPGFGPTAGAAISHHMDID 248          
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 2.332e-51
Identity = 92/164 (56.10%), Postives = 119/164 (72.56%), Query Frame = 3
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W  M   ER R++ + ADLIE++   LA +E  N GK +  +   ++   ++ L Y AGWADKI G T+P DGN+   T  EP+GV GQI+PWNFPLL+F WK+ PAL+CGNT+V+K AEQTPLTAL++  L  EAG PPGV+N+V GYGPTAGAA++SHMDVD
Sbjct:   77 WRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVD 240          
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.046e-51
Identity = 90/164 (54.88%), Postives = 121/164 (73.78%), Query Frame = 3
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W  M   ER R++ + ADLIE++   LA +E+ N GK +  +   ++   ++ L Y AGWADKI G T+P DG++   T HEP+GV GQI+PWNFPL++  WK+ PAL+CGNT+++K AEQTPLTAL+VA L  EAG PPGV+N+V GYGPTAGAA++SHMD+D
Sbjct:   72 WRTMDASERGRLLYKLADLIERDRLLLATMESLNAGKLFPNAYLMDLGGCIKTLRYCAGWADKIQGRTMPMDGDFFCYTRHEPVGVCGQIIPWNFPLVMLIWKIGPALSCGNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDID 235          
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 7.502e-50
Identity = 89/164 (54.27%), Postives = 117/164 (71.34%), Query Frame = 3
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W ++    R R++ + ADL+E++   LAALET + GKP++ +   ++   +R L Y+AGWADKI G T+P D N    T HEPIGV G I PWNFPLL+  WK+APAL CGNT+VLK AEQTPLTALY+  L  EAG PPGV+N+V G+GPT GAA++SH  ++
Sbjct:   88 WRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHAFFIDLEGCIRTLRYFAGWADKIQGKTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTMVLKPAEQTPLTALYLGSLIKEAGFPPGVVNIVPGFGPTVGAAISSHPQIN 251          
The following BLAST results are available for this feature:
BLAST of CK739872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AL1A1_HUMAN2.492e-5357.32Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A1_HORSE3.254e-5356.71Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A7_MOUSE9.468e-5356.10Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A1_MOUSE1.615e-5256.71Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL1A1_RAT2.755e-5257.32Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_SHEEP1.786e-5156.10Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_CHICK2.332e-5154.27Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_BOVIN2.332e-5156.10Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A1_RABIT3.046e-5154.88Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
AL1A3_HUMAN7.502e-5054.27Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6264 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739872 ID=CK739872; Name=CK739872; organism=Citrus sinensis; type=EST; length=495bp
CTTGGCCAAAGATGACCCCTTATGAGAGGTCAAGGATTATGTTGCGGGCT
GCTGACTTGATTGAGAAAAACATGGAGGAGCTGGCAGCTTTGGAGACATG
GAACAATGGAAAGCCCTATGTACAATCTCTCAAATCTGAAGTACCAATGG
TGGTTCGCCTGTTGCACTATTATGCTGGATGGGCTGATAAAATCCACGGA
CTAACTGTCCCTGGTGATGGAAATTACCATATTCAAACTTTACATGAACC
AATTGGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGT
TTACTTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTA
AAGTCTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATT
CCATGAGGCTGGTCTTCCCCCTGGTGTTTTGAATGTAGTCTCTGGTTATG
GGCCAACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACA
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