CK739873

Overview
NameCK739873
Unique NameCK739873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.009e-55
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  207 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 314          
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.935e-55
Identity = 101/108 (93.52%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAA+II+KG +CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  207 AKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 314          
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.006e-55
Identity = 101/108 (93.52%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREA+D+IKKGKMC LFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  207 AKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 314          
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 8.540e-55
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 2
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAAD+I KGKMC LFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+
Sbjct:  205 AKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 312          
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 9.442e-54
Identity = 99/108 (91.67%), Postives = 104/108 (96.30%), Query Frame = 2
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  201 AKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 308          
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.728e-51
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIR RYREA+DIIKKG+MC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTRE
Sbjct:  176 AKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTRE 283          
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.847e-41
Identity = 83/109 (76.15%), Postives = 91/109 (83.49%), Query Frame = 2
Query:    2 AKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            A+LIR RYRE A++IK +GKMC L INDLDAGAGR    TQYTVN Q+VNATLMNIADNPT+VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct:   75 ARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183          
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.115e-41
Identity = 83/109 (76.15%), Postives = 91/109 (83.49%), Query Frame = 2
Query:    2 AKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            A+LIR RYRE A++IK +GKMC L INDLDAGAGR    TQYTVN Q+VNATLMNIADNPT+VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct:   75 ARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRD 183          
The following BLAST results are available for this feature:
BLAST of CK739873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_TOBAC1.009e-5594.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.935e-5593.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU5.006e-5593.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU8.540e-5593.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL9.442e-5491.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE5.728e-5187.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.847e-4176.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC4.115e-4176.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6265 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739873 ID=CK739873; Name=CK739873; organism=Citrus sinensis; type=EST; length=327bp
CGCAAAATTAATTAGGCAAAGGTATCGTGAAGCAGCAGACATCATCAAAA
AGGGAAAGATGTGCTGCCTTTTCATCAATGATCTTGATGCAGGAGCCGGT
AGGATGGGTGGGACTACCCAATACACAGTCAACAATCAAATGGTGAATGC
CACCCTCATGAACATTGCTGACAACCCAACCAACGTCCAGCTCCCTGGTA
TGTACAACCAGGAAGAGAATCCCCGTGTTCCCATTATAGTCACTGGTAAT
GACTTCTCCACGTTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAAAA
GTTTTACTGGGCCCCTACTCGGGAAGA
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