CK739877

Overview
NameCK739877
Unique NameCK739877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.457e-14
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 3
Query:  135 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L I
Sbjct:   17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_SCHPO (40S ribosomal protein S20 OS=Schizosaccharomyces pombe GN=rps20 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.442e-14
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 3
Query:  117 EEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            ++    +H+IRITL+S+NV+NLEKVC+DLV  AKDK+LRVKGPVR+PTK L I
Sbjct:   11 QQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKI 63          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_DROME (40S ribosomal protein S20 OS=Drosophila melanogaster GN=RpS20 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.120e-13
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   78 MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            MA A     KP + ++   +H+IRITL+S+NV++LE VC DL+ GAK++ LRVKGPVRMPTK L I
Sbjct:    1 MAAAPKDIEKPHVGDSAS-VHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65          
The following BLAST results are available for this feature:
BLAST of CK739877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RS20_XENLA1.457e-1476.6040S ribosomal protein S20 OS=Xenopus laevis GN=rps... [more]
RS20_SCHPO9.442e-1466.0440S ribosomal protein S20 OS=Schizosaccharomyces p... [more]
RS20_DROME6.120e-1356.0640S ribosomal protein S20 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739877 ID=CK739877; Name=CK739877; organism=Citrus sinensis; type=EST; length=275bp
CAGCAACTGCAGCAGCAGCTCTCACTCTTCCGGTCTCTCGAAATCCTATA
AGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTATGCAGCAATGAAGCC
CACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGATTCATAAGATCAGAA
TCACACTTTCCTCCAAGAATGTTAAAAATCTTGAGAAAGTCTGTACGGAT
TTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGTCCAGTGAG
GATGCCTACCAAGGGTCTTCACATC
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