CK739881

Overview
NameCK739881
Unique NameCK739881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length292
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.387e-35
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 2
Query:   32 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            Q+  D P+FK V+VGDGGTGKTTFVKRH+TGEFEKKY  T+GVEVHPL F TN G IRF  WDTAGQEKFGGLRDGYYI GQCA+IM
Sbjct:    3 QEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIM 89          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.545e-35
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 2
Query:   44 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QC IIM
Sbjct:    4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIM 86          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.854e-35
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 2
Query:   50 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+I+F  WDTAGQEKFGGLRDGYYI+GQC IIM
Sbjct:    6 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYMATLGVEVHPLGFSTNFGQIQFDVWDTAGQEKFGGLRDGYYINGQCGIIM 86          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_ONCVO (GTP-binding nuclear protein Ran OS=Onchocerca volvulus GN=ran-1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.681e-34
Identity = 68/83 (81.93%), Postives = 73/83 (87.95%), Query Frame = 2
Query:   44 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            D P+FKLV+VGDGGTGKTTFVKRHLTG+ EKKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCAIIM
Sbjct:    6 DIPTFKLVLVGDGGTGKTTFVKRHLTGDPEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 88          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.681e-34
Identity = 67/85 (78.82%), Postives = 74/85 (87.06%), Query Frame = 2
Query:   38 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            + + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F TN G+I+F  WDTAGQEKFGGLRDGYYI+ QC IIM
Sbjct:    2 SAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFHTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIM 86          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_BRUMA (GTP-binding nuclear protein Ran OS=Brugia malayi PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.195e-34
Identity = 67/83 (80.72%), Postives = 72/83 (86.75%), Query Frame = 2
Query:   44 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            D P+FKLV+VGDGGTGKTTFVKRHLTG+FEKKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCA  M
Sbjct:    6 DIPTFKLVLVGDGGTGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAFNM 88          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.387e-34
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 2
Query:   44 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEV+PL F TN G+++F  WDTAGQEKFGGLRDGYYI+GQC IIM
Sbjct:    4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVNPLGFHTNFGELKFDVWDTAGQEKFGGLRDGYYINGQCGIIM 86          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.342e-34
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 2
Query:   35 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            Q  + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+I F  WDTAGQEK GGLRDGYYI GQC IIM
Sbjct:    3 QPQNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIM 88          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 2
Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 2
Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89          
The following BLAST results are available for this feature:
BLAST of CK739881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RAN_DROME3.387e-3578.16GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
GSP1_ASHGO7.545e-3580.72GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
GSP1_NEUCR9.854e-3582.72GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
RAN_ONCVO1.681e-3481.93GTP-binding nuclear protein Ran OS=Onchocerca volv... [more]
GSP1_CANGA1.681e-3478.82GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
RAN_BRUMA2.195e-3480.72GTP-binding nuclear protein Ran OS=Brugia malayi P... [more]
GSP1_CANAL6.387e-3478.31GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
SPI1_SCHPO8.342e-3477.91GTP-binding nuclear protein spi1 OS=Schizosaccharo... [more]
RAN_XENTR3.170e-3383.54GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_XENLA3.170e-3383.54GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6273 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739881 ID=CK739881; Name=CK739881; organism=Citrus sinensis; type=EST; length=292bp
CGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATC
CAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACC
TTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGAC
CATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAA
TACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGGCTT
AGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATG
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