CK739881 | Citrus Genome Database

Overview


Name	CK739881
Unique Name	CK739881
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	292

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 2

Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89

[Close]

BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 2

Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89

[Close]

BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 2

Query:   50 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            P +KL++VGDGG GKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN GK +F  WDTAGQEKFGGLRDGYYI   CAIIM
Sbjct:    8 PQYKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYYIKSDCAIIM 88

[Close]

BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 2

Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89

[Close]

BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 2

Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89

[Close]

BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 2

Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89

[Close]

BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 2

Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89

[Close]

BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 2

Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89

[Close]

BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 2

Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89

[Close]

BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.062e-33
Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 2

Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIM 88

The following BLAST results are available for this feature:

BLAST of CK739881 vs. ExPASy Swiss-Prot

BLAST of CK739881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55


Match Name	E-value	Identity	Description
RAN_RAT	3.170e-33	83.54	GTP-binding nuclear protein Ran OS=Rattus norvegic...	[more]
RAN_PONAB	3.170e-33	83.54	GTP-binding nuclear protein Ran OS=Pongo abelii GN...	[more]
RAN_PLAFA	3.170e-33	79.01	GTP-binding nuclear protein Ran OS=Plasmodium falc...	[more]
RAN_MOUSE	3.170e-33	83.54	GTP-binding nuclear protein Ran OS=Mus musculus GN...	[more]
RAN_MACFA	3.170e-33	83.54	GTP-binding nuclear protein Ran OS=Macaca fascicul...	[more]
RAN_HUMAN	3.170e-33	83.54	GTP-binding nuclear protein Ran OS=Homo sapiens GN...	[more]
RAN_CHICK	3.170e-33	83.54	GTP-binding nuclear protein Ran OS=Gallus gallus G...	[more]
RAN_CANFA	3.170e-33	83.54	GTP-binding nuclear protein Ran OS=Canis familiari...	[more]
RAN_BOVIN	3.170e-33	83.54	GTP-binding nuclear protein Ran OS=Bos taurus GN=R...	[more]
RAN_SALSA	7.062e-33	82.28	GTP-binding nuclear protein Ran OS=Salmo salar GN=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6273 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61D03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739881 ID=CK739881; Name=CK739881; organism=Citrus sinensis; type=EST; length=292bp
CGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATC
CAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACC
TTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGAC
CATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAA
TACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGGCTT
AGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATG