CK739881

Overview
NameCK739881
Unique NameCK739881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length292
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.062e-33
Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 2
Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIM 88          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.062e-33
Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 2
Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIM 88          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.062e-33
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 2
Query:   53 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            +FKLV+VGDGGTGKTTFVKRH TGEF  +Y  T+GVEVHPL+F T+CG IRF  WDTAGQEKFGGLRDGYYI+GQC IIM
Sbjct:    7 AFKLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIM 86          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.808e-32
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 2
Query:   59 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            KLV+VGDGG GKTTFV+RHLTGEFE +Y PT+GV VHPL F+TN GKI F  WDTAGQEKFGGLRDGYYI G CAIIM
Sbjct:    8 KLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVWDTAGQEKFGGLRDGYYIQGNCAIIM 85          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.739e-31
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 2
Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKLV+VGDGGTGKTTF+KRHLTGEFEK+Y  T+GVEVH L F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.875e-31
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 2
Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FK+V+VGDGGTGKTTF+KRHLTGEFEK+Y  T+GVEVH L F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIM
Sbjct:   11 FKVVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 89          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.200e-26
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 2
Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            FKL+++GDGGTGKTT VKRHLTGEF+ +Y  T+GVEV  L F TN G  R   WDTAGQE++GGLRDGY++  QCAIIM
Sbjct:   11 FKLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIM 89          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.335e-23
Identity = 55/88 (62.50%), Postives = 62/88 (70.45%), Query Frame = 2
Query:   29 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            N+Q V    FKLV+VGDGG GKTTFV RH TGEFEK+Y  T GV V  +  +T  G IRF  WDTAGQEK GGLR+GYYI    AI+M
Sbjct:    4 NKQNV-VAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMM 90          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.073e-23
Identity = 55/88 (62.50%), Postives = 61/88 (69.32%), Query Frame = 2
Query:   29 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            N+Q V    FKLV+VGDGG GKTTFV RH TGEFEK+Y  T GV V  +   T  G IRF  WDTAGQEK GGLR+GYYI    AI+M
Sbjct:    4 NKQDV-VAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMM 90          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.249e-20
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 2
Query:   53 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 289
            SFK+++VGDG TGKTTFV RH+TGEF K+Y  TIGVE+  L F+       N  ++     DTAGQEKFGGLRDGYY+     ++
Sbjct:    6 SFKVILVGDGATGKTTFVTRHITGEFRKQYISTIGVEIRQLPFYVAGQSCPNGREVLLNVHDTAGQEKFGGLRDGYYVDSDACLL 90          
The following BLAST results are available for this feature:
BLAST of CK739881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RAN_DANRE7.062e-3382.28GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAN_CARAU7.062e-3382.28GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
GSP1_YARLI7.062e-3378.75GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
RAN_DICDI7.808e-3279.49GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RANT_RAT1.739e-3179.75GTP-binding nuclear protein Ran, testis-specific i... [more]
RANT_MOUSE3.875e-3178.48GTP-binding nuclear protein Ran, testis-specific i... [more]
RANL_DROME2.200e-2667.09GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN_TETTH1.335e-2362.50GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAN_TETPY5.073e-2362.50GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAN_GIALA5.249e-2054.12GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6273 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739881 ID=CK739881; Name=CK739881; organism=Citrus sinensis; type=EST; length=292bp
CGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATC
CAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACC
TTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGAC
CATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAA
TACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGGCTT
AGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATG
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