CK739881

Overview
NameCK739881
Unique NameCK739881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length292
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12573 contig Csv1_Contig12573:57..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.338e-15
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 2
Query:   53 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAI 286
            ++K+ ++GDGG GKTT++ R L G FEK Y  T+G   HP+ F  + G  I+F  WDTAGQEK   L+D YYI    AI
Sbjct:    7 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 85          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.923e-11
Identity = 29/78 (37.18%), Postives = 47/78 (60.26%), Query Frame = 2
Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 289
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++
Sbjct:    8 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.923e-11
Identity = 29/78 (37.18%), Postives = 47/78 (60.26%), Query Frame = 2
Query:   56 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 289
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++
Sbjct:    8 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.923e-11
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 2
Query:   53 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQE+F  +   YY   Q  +++
Sbjct:    9 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 88          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAB23_HUMAN (Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.923e-11
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 2
Query:   53 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQE+F  +   YY   Q  +++
Sbjct:    9 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 88          
The following BLAST results are available for this feature:
BLAST of CK739881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
GSP1_ENCCU1.338e-1549.37GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]
RAB9A_RAT9.923e-1137.18Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]
RAB9A_MOUSE9.923e-1137.18Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB23_MOUSE9.923e-1136.25Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
RAB23_HUMAN9.923e-1136.25Ras-related protein Rab-23 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6273 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739881 ID=CK739881; Name=CK739881; organism=Citrus sinensis; type=EST; length=292bp
CGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATC
CAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACC
TTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGAC
CATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAA
TACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGGCTT
AGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATG
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