CK739882

Overview
NameCK739882
Unique NameCK739882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13763 contig Csv1_Contig13763:148..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_NEUCR (40S ribosomal protein S16 OS=Neurospora crassa GN=rps-16 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.791e-44
Identity = 80/117 (68.38%), Postives = 100/117 (85.47%), Query Frame = 3
Query:    3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            C +G+GLIK+NG P++L  PEILR K YEPILLLG  +FA VD+R++V GGGH SQ+YA+RQ+IAKA+VA+Y KYVDE SK  +K  L+++DRTLLVADPRRCEPKKFGG+GAR+RF
Sbjct:   21 CVQGKGLIKVNGVPLKLYAPEILRAKLYEPILLLGTDKFAEVDIRLKVSGGGHVSQVYAVRQAIAKAIVAYYAKYVDEHSKNTLKTALIQFDRTLLVADPRRCEPKKFGGKGARSRF 137          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_CANGA (40S ribosomal protein S16 OS=Candida glabrata GN=RPS16 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.158e-43
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            K G+GLIK+NG PI LVEPEILRFK YEP+LL+G  +FA +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGG+GARARF
Sbjct:   23 KAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADARRPEPKKFGGKGARARF 138          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_ASHGO (40S ribosomal protein S16 OS=Ashbya gossypii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.158e-43
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +FA +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGARARF
Sbjct:   23 KAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARARF 138          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_YEAST (40S ribosomal protein S16 OS=Saccharomyces cerevisiae GN=RPS16A PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.976e-43
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            K G+GLIK+NG PI LVEPEILRFK YEP+LL+G  +F+ +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QKYVDEQSK E+K     YDRTLL+AD RR EPKKFGG+GAR+RF
Sbjct:   23 KAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRF 138          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_CANAL (40S ribosomal protein S16 OS=Candida albicans GN=RPS16 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.581e-43
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            K G+GLIKING PI LV+PEILRFK YEP+ L+G  +F G+D+R++V GGGH SQ+YAIRQ+IAK LVA++QKYVDE SK E+K I   YD+TLLVAD RR EPKKFGGRGARARF
Sbjct:   22 KAGKGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEASKNELKKIFASYDKTLLVADSRRMEPKKFGGRGARARF 137          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_KLULA (40S ribosomal protein S16 OS=Kluyveromyces lactis GN=RPS16 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.749e-43
Identity = 80/116 (68.97%), Postives = 98/116 (84.48%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +FA +D+R++V GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGAR+RF
Sbjct:   23 KAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARSRF 138          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_CAEEL (40S ribosomal protein S16 OS=Caenorhabditis elegans GN=rps-16 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 9.806e-43
Identity = 79/117 (67.52%), Postives = 100/117 (85.47%), Query Frame = 3
Query:    3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            CK+G+GLIK+NG P+E +EP+ILR K  EP+LL+G+ RF  VD+RIRV GGGH +QIYA+RQ++AKALVA+Y KYVDEQSK+E+K+I   YD++LLVADPRR E KKFGG GARAR+
Sbjct:   23 CKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARY 139          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_DEBHA (40S ribosomal protein S16 OS=Debaryomyces hansenii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.726e-42
Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            K G+GLIK+NG PI LV+PEILRFK YEP+ L+G  +F  +D+R++V GGGH SQ+YAIRQ+IAK LVA++QK+VDE SK E+K +   YD+TLLVAD RR EPKKFGGRGARARF
Sbjct:   22 KAGKGLIKVNGAPITLVQPEILRFKVYEPLTLVGLDKFQNIDIRVKVSGGGHVSQVYAIRQAIAKGLVAYHQKFVDEASKNELKKVFASYDKTLLVADSRRMEPKKFGGRGARARF 137          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_DICDI (40S ribosomal protein S16 OS=Dictyostelium discoideum GN=rps16 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.415e-41
Identity = 75/114 (65.79%), Postives = 100/114 (87.72%), Query Frame = 3
Query:   12 GRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            G+GLIK+NG P+E ++P+ L+ K YEP+L++G+  F+ VD+R+RV+GGG  +QIYAIRQ+IAK++VA++QKYVDE+SK EIK  ++ YDR+LLVADPRRCEPKKFGGRGARARF
Sbjct:   29 GKGLIKVNGVPLEFIQPKNLKLKVYEPVLIVGKDVFSQVDIRVRVRGGGSVAQIYAIRQAIAKSIVAYHQKYVDEESKNEIKKKILDYDRSLLVADPRRCEPKKFGGRGARARF 142          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_SACEX (40S ribosomal protein S16 OS=Saccharomyces exiguus GN=RPS16 PE=3 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 3.155e-41
Identity = 76/116 (65.52%), Postives = 96/116 (82.76%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +F  +D+R+RV GGGH SQ+YAIRQ+IAK L+A++QK+VDEQSK E+K     YDRTLL+AD R  EPKKFGG+GAR+R+
Sbjct:   23 KAGKGLIKVNGAPITLVQPEILRFKVYEPLLLVGLDKFTNIDIRVRVTGGGHVSQVYAIRQAIAKGLIAYHQKFVDEQSKNELKRAFTLYDRTLLIADSRMPEPKKFGGKGARSRY 138          
The following BLAST results are available for this feature:
BLAST of CK739882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS16_NEUCR6.791e-4468.3840S ribosomal protein S16 OS=Neurospora crassa GN=... [more]
RS16_CANGA1.158e-4370.6940S ribosomal protein S16 OS=Candida glabrata GN=R... [more]
RS16_ASHGO1.158e-4370.6940S ribosomal protein S16 OS=Ashbya gossypii GN=RP... [more]
RS16_YEAST1.976e-4369.8340S ribosomal protein S16 OS=Saccharomyces cerevis... [more]
RS16_CANAL2.581e-4370.6940S ribosomal protein S16 OS=Candida albicans GN=R... [more]
RS16_KLULA5.749e-4368.9740S ribosomal protein S16 OS=Kluyveromyces lactis ... [more]
RS16_CAEEL9.806e-4367.5240S ribosomal protein S16 OS=Caenorhabditis elegan... [more]
RS16_DEBHA3.726e-4267.2440S ribosomal protein S16 OS=Debaryomyces hansenii... [more]
RS16_DICDI2.415e-4165.7940S ribosomal protein S16 OS=Dictyostelium discoid... [more]
RS16_SACEX3.155e-4165.5240S ribosomal protein S16 OS=Saccharomyces exiguus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6274 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739882 ID=CK739882; Name=CK739882; organism=Citrus sinensis; type=EST; length=354bp
ACTGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAG
TTAGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTT
GCTCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGG
GCGGGGGACACACGTCGCAGATCTACGCCATCCGTCAGAGCATCGCCAAG
GCTCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGA
GATTAAGGACATTCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACC
CACGCCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGG
TTCC
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