CK739882

Overview
NameCK739882
Unique NameCK739882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.626e-21
Identity = 55/115 (47.83%), Postives = 71/115 (61.74%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARAR 350
            + G+G ++IN  P+EL  PE+ R K  EP+ L G      VD+ +RV GGG   Q  A R  IA+ LV       D  S  ++K+  V+YDRT+LV DPRR EPKK+GGRGARAR
Sbjct:  170 REGKGRVRINKVPVELYTPELARLKIMEPLKLAG-DVINDVDINVRVVGGGIVGQAEAARMVIARGLV-------DWTSDMDLKEKFVQYDRTMLVGDPRRSEPKKYGGRGARAR 276          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_METST (30S ribosomal protein S9P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps9p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.378e-20
Identity = 56/115 (48.70%), Postives = 68/115 (59.13%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARAR 350
            K G G +K+N  P+EL EPE+ R K +EP+ L G      VD+ +RV GGG   Q  A R  IAK LV +            +KD  V+YDRT+LV DPRR E KKFGG GARAR
Sbjct:   21 KEGTGRVKVNRKPVELYEPELARLKIFEPLELAG-DIVNSVDINVRVVGGGIMGQAEAARMVIAKGLVEY-------TGDMNLKDRYVQYDRTMLVGDPRRSESKKFGGPGARAR 127          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_METKA (30S ribosomal protein S9P OS=Methanopyrus kandleri GN=rps9p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.070e-20
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARAR 350
            + G G +++N  P+ ++EPE+ R K  EP+++ G    + VD+ ++V+GGG  SQ  A R +IA+ LV +           +++D  + YDR +L  DPRR EPKKFGGRGARAR
Sbjct:   21 REGEGRVRVNKRPVNIIEPEMARMKIMEPLIIAGEDIVSQVDIDVKVQGGGWMSQAEAARIAIARGLVEW-------TGDPDLRDAYMAYDRHMLKGDPRRKEPKKFGGRGARAR 128          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_PYRHO (30S ribosomal protein S9P OS=Pyrococcus horikoshii GN=rps9p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.433e-19
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK 323
            + GRG ++ING P+E++EPEI RF   EP++L G   +  VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K
Sbjct:   20 REGRGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEPHK 118          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_PYRAB (30S ribosomal protein S9P OS=Pyrococcus abyssi GN=rps9p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.433e-19
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK 323
            + G+G ++ING P+ELVEPEI RF   EP++L G   +  VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K
Sbjct:   20 REGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEPHK 118          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_PYRFU (30S ribosomal protein S9P OS=Pyrococcus furiosus GN=rps9p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.561e-19
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK 323
            + G+G ++ING P+E++EPEI RF   EP++L G   +  VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K
Sbjct:   20 REGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMAIARALVEW-------TGDMSLKEKFMKYDRTMLVGDPRRTEPHK 118          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_THEVO (30S ribosomal protein S9P OS=Thermoplasma volcanium GN=rps9p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.290e-18
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARAR 350
            K+G+G+I ING P EL   E+LR K  EP+ L    +  G+D+ ++VKGGG T Q  A R +IA+ +V F Q         E++++  +YDRTL+V D R   PKK GGRGARA+
Sbjct:   20 KKGKGIITINGTPAELYPVEVLRNKILEPVKL-AEDKAKGIDVTVKVKGGGVTGQADASRTAIARGIVKFLQD-------NELENLFRQYDRTLIVNDVRIKLPKKPGGRGARAK 126          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_METJA (30S ribosomal protein S9P OS=Methanocaldococcus jannaschii GN=rps9p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.873e-18
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK 323
            + G+G I+IN  PIEL+EP+  R K  EPILL G    + +D+ + VKGGG   Q+ A R +I KA+V F          KE++D  + YDRTLLV+D RR EP K
Sbjct:   21 REGKGRIRINKIPIELIEPKYKRMKLMEPILLAGEEVISQMDIDVTVKGGGVMGQMDAARTAIGKAIVEF-------TGSKELRDKFLAYDRTLLVSDARRTEPHK 119          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_HALSA (30S ribosomal protein S9P OS=Halobacterium salinarium GN=rps9p PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.401e-18
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = 3
Query:   12 GRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            G G ++IN  P+ELVEPE+ R K  EP  + G      VD+ I V GGG   Q  A+R +IA+ LV  Y          E++D    +DR+LLV D R+ E KK+GG GARAR+
Sbjct:   21 GEGRVRINSQPVELVEPEMARLKMLEPFRISGSDLRGDVDIDIDVAGGGFAGQADAVRTAIARGLVEHY-------GDAELRDAFREFDRSLLVNDVRQRESKKWGGPGARARY 127          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_THEAC (30S ribosomal protein S9P OS=Thermoplasma acidophilum GN=rps9p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.092e-17
Identity = 50/115 (43.48%), Postives = 76/115 (66.09%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARAR 350
            K+G+G++ ING P+EL    +LR K  EP LL+   +   +D+ ++V+GGG T Q  A R +IA+A+V    KY+++    E++++  +YDRTL+V D R   PKK GGRGARA+
Sbjct:   17 KKGKGIVTINGYPVELYPVRVLRNKIMEP-LLIAEDKAKDLDIAVKVRGGGVTGQADASRTAIARAIV----KYLNDT---ELENLFRQYDRTLIVNDVRIKLPKKAGGRGARAK 123          
The following BLAST results are available for this feature:
BLAST of CK739882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RLSX_METTH3.626e-2147.83Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RS9_METST1.378e-2048.7030S ribosomal protein S9P OS=Methanosphaera stadtm... [more]
RS9_METKA3.070e-2041.7430S ribosomal protein S9P OS=Methanopyrus kandleri... [more]
RS9_PYRHO4.433e-1943.4030S ribosomal protein S9P OS=Pyrococcus horikoshii... [more]
RS9_PYRAB4.433e-1944.3430S ribosomal protein S9P OS=Pyrococcus abyssi GN=... [more]
RS9_PYRFU7.561e-1942.4530S ribosomal protein S9P OS=Pyrococcus furiosus G... [more]
RS9_THEVO1.290e-1845.2230S ribosomal protein S9P OS=Thermoplasma volcaniu... [more]
RS9_METJA2.873e-1846.2330S ribosomal protein S9P OS=Methanocaldococcus ja... [more]
RS9_HALSA6.401e-1843.8630S ribosomal protein S9P OS=Halobacterium salinar... [more]
RS9_THEAC1.092e-1743.4830S ribosomal protein S9P OS=Thermoplasma acidophi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6274 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739882 ID=CK739882; Name=CK739882; organism=Citrus sinensis; type=EST; length=354bp
ACTGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAG
TTAGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTT
GCTCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGG
GCGGGGGACACACGTCGCAGATCTACGCCATCCGTCAGAGCATCGCCAAG
GCTCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGA
GATTAAGGACATTCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACC
CACGCCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGG
TTCC
back to top