CK739889

Overview
NameCK739889
Unique NameCK739889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.024e-16
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  143 DEMLEYMRSSEVLIKRLMDVLVKGLNVKRID----EIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEH 508
            D + EY    + L  +LM + +  L V   D     +   +      + LN+YP+CP P+  +G+  H+D +  TIL Q++  GL V +D+   W+ V P  GSL++N+GD   I+SNG +KS+ H
Sbjct:  165 DIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDD-LGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLH 289          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.024e-16
Identity = 55/177 (31.07%), Postives = 85/177 (48.02%), Query Frame = 2
Query:   29 YGSSFVPHVERALEWKDFL-SLFYVSEEETSAFWP---PVCKDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRR--------VNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            YG+     V+    W D L    +        FWP   P  ++   EY +  ++++  L   L  GL++       EP               + +NYYP CP P+L +GV  H+D+S  T+L+ +++ GL V KD    W     I  +LI++IGD ++IMSNG+YKS+ H    N
Sbjct:  115 YGTRLQKEVDGKKGWVDHLFHKIWPPSAINYQFWPKNPPAYREANEEYAKRLQLVVDNLFKYLSLGLDL-------EPNSFKDGAGGDDLVYLMKINYYPPCPRPDLALGVA-HTDMSAITVLVPNEVPGLQVYKDG--HWYDCKYIPNALIVHIGDQVEIMSNGKYKSVYHRTTVN 281          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.024e-16
Identity = 54/161 (33.54%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   65 LEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSS----EVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIA 520
            L+W+    L ++     S    P   DE  E MR      E L + L+D+L + L +++     +    GS+  N    ++ YP CP P+L  G+  H+D     +L QDD + GL + KD    WI V P+  S+++N+GD L++++NG+YKS+ H VIA
Sbjct:   84 LDWESTFFLRHLPVSNISEV--PDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEK--GYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIA 238          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.024e-16
Identity = 46/134 (34.33%), Postives = 79/134 (58.96%), Query Frame = 2
Query:  134 VCKDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIA 520
            V ++ M ++ +  E L + L+D+L + L +++     +    GS+  N    ++ YP CP P+L  G+  H+D     +L QDD + GL + KD    WI V P+  S+++N+GD L++++NG+YKS+ H VIA
Sbjct:  109 VYREVMRDFRKRLEKLAEELLDLLCENLGLEK--SYLKNTFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGR--WIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIA 238          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.570e-16
Identity = 52/160 (32.50%), Postives = 88/160 (55.00%), Query Frame = 2
Query:   65 LEWKDFLSLFYVSEEETSAFWPPVCKDE---MLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRR----VNLNYYPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIA 520
            L+W+    L ++     S   P + +D    M E+    E L ++L+D+L + + +++     +    GS+       ++ YP CP PEL  G+  H+D     +L QD+ + GL + KD   +WI V P+  S++INIGD L++++NG+YKS+ H VIA
Sbjct:   84 LDWESTFFLRHLPVSNISEI-PDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEK--GYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDG--EWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVIA 238          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.570e-16
Identity = 45/132 (34.09%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  140 KDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIA 520
            ++ M ++ +  E L + L+D+L + L +++     +    GS+  N    ++ YP CP P+L  G+  H+D     +L QDD + GL + KD    WI V P+  S+++N+GD L++++NG+YKS+ H VIA
Sbjct:  111 REVMRDFAKRLEKLAEELLDLLCENLGLEK--GYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDE--QWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIA 238          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.570e-16
Identity = 45/132 (34.09%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  140 KDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIA 520
            ++ M ++ +  E L + L+D+L + L +++     +    GS+  N    ++ YP CP P+L  G+  H+D     +L QDD + GL + KD    WI V P+  S+++N+GD L++++NG+YKS+ H VIA
Sbjct:  111 REVMRDFAKRLEKLAEELLDLLCENLGLEK--GYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIA 238          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.119e-15
Identity = 46/126 (36.51%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  155 EYMRSSEVLIKRLMDVLVKGLNVKRIDEI-------REPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHV-RKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEH 508
            EY+   E L  RL+  ++  L V  +++I       +    +G   + LN+YP+CP PE  +G+  H+D +  TIL Q + GGL V R+++G  W+ V P  G L++NIGD   I+SNG+  S+ H
Sbjct:  162 EYVDEMEKLASRLLYCILGSLGVT-VEDIEWAHKLEKSGSKVGRGAIRLNHYPVCPEPERAMGLAAHTDSTILTILHQSNTGGLQVFREESG--WVTVEPAPGVLVVNIGDLFHILSNGKIPSVVH 284          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.119e-15
Identity = 45/132 (34.09%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  140 KDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIA 520
            ++ M ++ +  E L + L+D+L + L +++     +    GS+  N    ++ YP CP P+L  G+  H+D     +L QDD + GL + KD    WI V P+  S+++N+GD L++++NG+YKS+ H VIA
Sbjct:  111 REVMRDFAKRLEKLAEELLDLLCENLGLEK--GYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDE--QWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIA 238          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.909e-15
Identity = 49/162 (30.25%), Postives = 86/162 (53.09%), Query Frame = 2
Query:   65 LEWKDFLSLFYVSEEETSAF--WPPVCKDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRR----VNLNYYPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGS 529
            ++W+    L ++ E   S         K  M E+ +  E L + L+D+L + L +++     +    GS+       ++ YP CP P+L  G+  H+D     +L QDD + GL + KD   +WI V P+  ++++N+GD L++++NGRYKS+ H V+   S
Sbjct:   84 MDWESTFFLRHLPESNISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEK--GYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--NWIDVPPMRHAIVVNLGDQLEVITNGRYKSVMHRVLTQTS 241          
The following BLAST results are available for this feature:
BLAST of CK739889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
G3OX1_ARATH5.024e-1634.13Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
FLS_EUSGR5.024e-1631.07Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
ACCO3_PETHY5.024e-1633.541-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCO2_SOLLC5.024e-1634.331-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
ACCO_ACTDE8.570e-1632.501-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO4_SOLLC8.570e-1634.091-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO1_PETHY8.570e-1634.091-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
G3OX4_ARATH1.119e-1536.51Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
ACCO1_SOLLC1.119e-1534.091-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO1_CUCME1.909e-1530.251-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6281 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739889 ID=CK739889; Name=CK739889; organism=Citrus sinensis; type=EST; length=533bp
GGAGAATTCACCAATAAATAATGTCAGGTACGGCTCAAGCTTTGTTCCCC
ATGTGGAAAGGGCTCTCGAGTGGAAAGACTTTCTCAGCCTGTTTTATGTT
TCTGAGGAAGAAACTTCTGCTTTTTGGCCTCCTGTTTGCAAGGATGAAAT
GTTGGAGTACATGAGGAGTTCTGAAGTTCTCATCAAACGTTTAATGGATG
TGCTAGTAAAGGGGCTAAACGTGAAACGAATTGATGAAATAAGAGAACCT
ATGTTGTTGGGCTCAAGAAGAGTTAACCTCAACTATTATCCTATGTGTCC
CAATCCTGAACTCACAGTTGGCGTAGGCCGTCATTCAGATATTTCAACAT
TCACTATCCTCCTCCAAGATGACATCGGGGGACTTCACGTGCGAAAGGAC
AATGGTACTGACTGGATTCATGTCGCTCCAATTAGCGGATCACTCATTAT
CAACATTGGTGATGCATTGCAAATCATGAGCAATGGTCGATACAAAAGTA
TTGAGCATTGTGTGATTGCCAATGGAAGCCAGA
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