CK739889

Overview
NameCK739889
Unique NameCK739889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.494e-15
Identity = 59/187 (31.55%), Postives = 86/187 (45.99%), Query Frame = 2
Query:   11 PINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEML-----EYMRSSEVLIK----------RLMDVLVKGLNVKRIDEIREPMLLGSRRV-NLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            P  +  Y SSF       L WK+ LS      +      P +  D ++     ++ R  EV  +           +M+VL + L V R    R     G+  +  LNYYP C  P  T+G G H D ++ TIL QD++GGL V  +    W  + P + + ++NIGD    +SNGRYKS  H  + N
Sbjct:  109 PGESCGYASSFTGRFASKLPWKETLSFRSCPSD------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRR--FFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEG--RWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVN 285          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.257e-15
Identity = 59/187 (31.55%), Postives = 86/187 (45.99%), Query Frame = 2
Query:   11 PINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEML-----EYMRSSEVLIK----------RLMDVLVKGLNVKRIDEIREPMLLGSRRV-NLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            P  +  Y SSF       L WK+ LS      +      P +  D ++     ++ R  EV  +           +M+VL + L V R    R     G+  +  LNYYP C  P  T+G G H D ++ TIL QD++GGL V  +    W  + P + + ++NIGD    +SNGRYKS  H  + N
Sbjct:  109 PGESCGYASSFTGRFASKLPWKETLSFRSCPSD------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRR--FFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEG--RWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVN 285          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.257e-15
Identity = 59/187 (31.55%), Postives = 86/187 (45.99%), Query Frame = 2
Query:   11 PINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEML-----EYMRSSEVLIK----------RLMDVLVKGLNVKRIDEIREPMLLGSRRV-NLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            P  +  Y SSF       L WK+ LS      +      P +  D ++     ++ R  EV  +           +M+VL + L V R    R     G+  +  LNYYP C  P  T+G G H D ++ TIL QD++GGL V  +    W  + P + + ++NIGD    +SNGRYKS  H  + N
Sbjct:  109 PGESCGYASSFTGRFASKLPWKETLSFRSCPSD------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRR--FFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEG--RWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVN 285          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.253e-15
Identity = 50/158 (31.65%), Postives = 84/158 (53.16%), Query Frame = 2
Query:   77 DFLSLFYVSEEETSAFWPPVCKDE-----MLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRR----VNLNYYPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIA 520
            D+ S FY+    TS        D+     M E+    E L ++L+D+L + L +++     +    G+        ++ YP CP P+L  G+  H+D     +L QDD + GL + KD    W+ V P+  S+++N+GD L++++NG+YKS+ H VIA
Sbjct:   91 DWESTFYLRHRPTSNISEVPDLDDQYRKLMKEFAAQIERLSEQLLDLLCENLGLEKA--YLKNAFYGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--HWVDVPPMKHSIVVNLGDQLEVITNGKYKSVMHRVIA 244          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.555e-15
Identity = 58/183 (31.69%), Postives = 78/183 (42.62%), Query Frame = 2
Query:   29 YGSSFVPHVERALEWKDFLSLFYVS------EEETSAFWPPVCKDE--------MLEYMRSSEVLIKRLMDVLVKGLNV--KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGS 529
            Y SSF       L WK+ LS  Y S      EE    +       E           Y      L   LM+VL + L +   R    R         + LNYYP C  P  T+G G H D ++ TIL QD +GGL V  +    W  + P  G+L++N+GD    +SN RY+S  H  + N +
Sbjct:  117 YASSFTGRFASKLPWKETLSFRYSSAGDEEGEEGVGEYLVRKLGAEHGRRLGEVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDSIMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEG--RWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNST 297          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.555e-15
Identity = 51/180 (28.33%), Postives = 91/180 (50.56%), Query Frame = 2
Query:   11 PINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEML--EYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPML--LGSRRVNLNYYPMCP----NPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANG 526
            P N   YG+  +  +   + W ++L L    +   S +   + K   L  +Y  +   +   ++D++ +GL ++  +   + ++         +N+YP CP    N E  +G G H+D    +IL  ++  G  +   +G+ WI V P   S  IN+GD+LQ+M+NGR+KS+ H V+ANG
Sbjct:   86 PANPFGYGNKRIG-LNGDIGWIEYLLLTTNQDHNFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGS-WISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANG 263          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 57/179 (31.84%), Postives = 86/179 (48.04%), Query Frame = 2
Query:    2 ENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLE-----YMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            + S  N +  GS+F    E+   W D L L Y      +  WP   K +ML      Y   +  +   ++ +L +GL + R D     +  G   V++NYYP  PNP  T+G+  H D    T+LL   + GL +    G  WI V P+  SL+IN G  L++++NG  K++EH    N
Sbjct:   98 DRSERNKLFCGSAFETLGEKY--WIDVLELLYPLPSGDTKDWPH--KPQMLREVVGNYTSLARGVAMEILRLLCEGLGL-RPDFFVGDISGGRVVVDINYYPPSPNPSRTLGLPPHCDRDLMTVLLPGAVPGLEIAYKGG--WIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATN 269          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 43/131 (32.82%), Postives = 78/131 (59.54%), Query Frame = 2
Query:  140 KDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVI 517
            ++ M ++ +  E L + L+D+L + L +++     + +  G++  N    ++ YP CP P+L  G+  H+D     +L QDD + GL + KD    WI V P+  S+++N+GD L++++NG+YKS+ H VI
Sbjct:  111 REVMRDFAKRLEKLAEELLDLLCENLGLEK--GYLKKIFYGTKGPNFGSKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVTGLQLLKDG--QWIDVPPMRLSIVVNLGDQLEVITNGKYKSVMHRVI 237          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 49/159 (30.82%), Postives = 81/159 (50.94%), Query Frame = 2
Query:   71 WKDFLSL---FYVSEEETSAFWPPVCK---DEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGS 529
            W+D L L   F V +      WP   K   D + ++   +  + K L+ +L +G+ ++  D     +  G+  +N+N+YP CPNP+  +G   H D +  T+LL   + GL V      DWI V P   + ++N G  L++++NG  KSIEH  + N +
Sbjct:  119 WRDCLRLACPFPVDDSINE--WPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQA-DYFEGDLSGGNVILNINHYPSCPNPDKALGQPPHCDRNLITLLLPGAVNGLEVSYKG--DWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSA 272          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/133 (30.08%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  149 MLEYMRSSEVLIKRLMDVLVKGLN--------VKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            M E+ R    L  +L+++ +  L         V+   +I E M   +  ++LN+YP CP+P+  +G+  H+D   FT +LQ  + GL + +     W+ V  + G++++N+GD  QI++NGR+ S+ H  + N
Sbjct:  163 MEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETM---TATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVN 292          
The following BLAST results are available for this feature:
BLAST of CK739889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GAO1B_WHEAT2.494e-1531.55Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1D_WHEAT3.257e-1531.55Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1A_WHEAT3.257e-1531.55Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
ACCO_DIACA4.253e-1531.65Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
GAOX1_ORYSJ5.555e-1531.69Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G2OX1_PEA5.555e-1528.33Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
IDS2_HORVU7.255e-1531.84Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
ACCO_TOBAC7.255e-1532.821-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
IDS3_HORVU9.475e-1530.822'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
G3O23_WHEAT9.475e-1530.08Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6281 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739889 ID=CK739889; Name=CK739889; organism=Citrus sinensis; type=EST; length=533bp
GGAGAATTCACCAATAAATAATGTCAGGTACGGCTCAAGCTTTGTTCCCC
ATGTGGAAAGGGCTCTCGAGTGGAAAGACTTTCTCAGCCTGTTTTATGTT
TCTGAGGAAGAAACTTCTGCTTTTTGGCCTCCTGTTTGCAAGGATGAAAT
GTTGGAGTACATGAGGAGTTCTGAAGTTCTCATCAAACGTTTAATGGATG
TGCTAGTAAAGGGGCTAAACGTGAAACGAATTGATGAAATAAGAGAACCT
ATGTTGTTGGGCTCAAGAAGAGTTAACCTCAACTATTATCCTATGTGTCC
CAATCCTGAACTCACAGTTGGCGTAGGCCGTCATTCAGATATTTCAACAT
TCACTATCCTCCTCCAAGATGACATCGGGGGACTTCACGTGCGAAAGGAC
AATGGTACTGACTGGATTCATGTCGCTCCAATTAGCGGATCACTCATTAT
CAACATTGGTGATGCATTGCAAATCATGAGCAATGGTCGATACAAAAGTA
TTGAGCATTGTGTGATTGCCAATGGAAGCCAGA
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