CK739889

Overview
NameCK739889
Unique NameCK739889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/133 (30.08%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  149 MLEYMRSSEVLIKRLMDVLVKGLN--------VKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            M E+ R    L  +L+++ +  L         V+   +I E M   +  ++LN+YP CP+P+  +G+  H+D   FT +LQ  + GL + +     W+ V  + G++++N+GD  QI++NGR+ S+ H  + N
Sbjct:  163 MEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETM---TATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVN 292          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 42/129 (32.56%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  149 MLEYMRSSEVLIKRLMDVLVKGLNVKR----IDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIA 520
            M E+    E L ++++D+L + L +++    +        L +    ++ YP CP PEL  G+  H+D     +L QDD + GL + KD   +W+ V P++ S++IN+GD +++++NG+YKS+ H V+A
Sbjct:  113 MKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDG--EWVDVPPMNHSIVINLGDQVEVITNGKYKSVMHRVVA 239          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 40/133 (30.08%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  149 MLEYMRSSEVLIKRLMDVLVKGLN--------VKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            M E+ R    L  +L+++ +  L         V+   +I E M   +  ++LN+YP CP+P+  +G+  H+D   FT +LQ  + GL + +     W+ V  + G++++N+GD  QI++NGR+ S+ H  + N
Sbjct:  163 MEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETM---TATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVN 292          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.111e-14
Identity = 44/129 (34.11%), Postives = 78/129 (60.47%), Query Frame = 2
Query:  128 PPVCKDEMLEYMRSSEVLIKRLMDVLVKGLNVKR--IDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEH 508
            PP  ++   EY R  + L +++M+ L +GL + R  I E+     +    +N+N+YP  P+ +   G+  H+DI+  T+++ ++I GL V KD+   WI V  I  ++I+NIGD + ++SNG+YK++ H
Sbjct:  109 PPDYREVNEEYARHVKTLSEKIMEWLSEGLGLGREAIKEVNGCWYV----MNINHYPPYPHSDSFNGLEPHTDINGLTLIITNEIPGLQVFKDD--HWIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLH 231          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.601e-14
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  272 VNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEH 508
            + LN+YP CP P+  +G+  H+D +  TIL Q++  GL V +D+   W+   P+ GSL++N+GD L I++NG + S+ H
Sbjct:  205 IQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNNTAGLQVFRDD-VGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLH 282          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 48/163 (29.45%), Postives = 92/163 (56.44%), Query Frame = 2
Query:   71 WKDFLSLF---YVSEEETSAFW---PPVCKDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRR---VNLNYYPMCPNPE---LTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            W ++L L     +S  +TSA +   P + ++ + EYM+  + +  ++++++ + L ++  D + + ML   +    + LN+YP         + VG G H+D    ++L  ++  GL +   +G+ W+ V P   S  IN+GDALQ+M+NGR+KS++H V+A+
Sbjct:  109 WIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSK-MLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGS-WVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLAD 269          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.021e-14
Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = 2
Query:  149 MLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVNLNY----YPMCPNPELTVGVGRHSDISTFTILLQDD-IGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIA 520
            M ++    E L + L+D+L + L +++     +    G++  N       YP CP  +L  G+  H+D     +L QDD + GL + KD+   WI V P+  S++IN+GD L++++NG+YKS+ H V+A
Sbjct:  114 MKDFAERLEKLAEYLLDLLCENLGLEK--GYLKKAFYGTKGPNFGTKVANYPPCPKADLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDD--QWIDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVVA 238          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.368e-13
Identity = 53/174 (30.46%), Postives = 88/174 (50.57%), Query Frame = 2
Query:   29 YGSSFVPHVERALEWKDFL-SLFYVSEEETSAFWP---PVCKDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPM-LLGSRRV----NLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            YG+S    +E    W D L    +        +WP   P  ++   EY +     ++++ D + + L++    E  E M   GS  +     +NYYP CP P+L +GV  H+D+S  T+L+ +++    V KD    W  V  I  ++I++IGD ++I+SNG+YKS+ H    N
Sbjct:  132 YGTSLQKEIEGKKGWVDHLFHKIWPPSAINYRYWPKNPPSYREANEEYAK----WLRKVADGIFRSLSLGLGLEGHEMMEAAGSEDIVYMLKINYYPPCPRPDLALGVVAHTDMSYITLLVPNEV---QVFKDG--HWYDVNYIPNAIIVHIGDQVEILSNGKYKSVYHRTTVN 296          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.787e-13
Identity = 41/130 (31.54%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  158 YMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCPNPELT----VGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            Y+ + + +   +++++ +GL +++ + +    LL   + +    LN+YP CP  +      VG G H+D    ++L  +   GL +   +GT W+ V P   S  IN+GDALQ+M+NGR+KS++H V+A+
Sbjct:  140 YITAVKNMCYAVLELMAEGLGIRQRNTLSR--LLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISVLRSNSTSGLQICLTDGT-WVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLAD 266          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.981e-13
Identity = 42/143 (29.37%), Postives = 76/143 (53.15%), Query Frame = 2
Query:  128 PPVCKDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCP-------NPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            P   ++ + EY  S   +   +++ +  GL +K  + + +  L+  +  +    LN+YP CP         +  +G G H+D    ++L  ++  GL +  ++G+ WI V P   S   N+GD+LQ+M+NGR+KS+ H V+AN
Sbjct:  120 PGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSK--LVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGS-WISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLAN 259          
The following BLAST results are available for this feature:
BLAST of CK739889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
G3O22_WHEAT9.475e-1530.08Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
ACCO_PERAE9.475e-1532.561-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
G3O21_WHEAT1.238e-1430.08Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
FLS_MATIN2.111e-1434.11Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
G3OX2_ARATH3.601e-1440.51Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX2_ARATH4.703e-1429.45Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ACCO_DIOKA8.021e-1433.331-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
FLS_SOLTU1.368e-1330.46Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
G2OX_PHACN1.787e-1331.54Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX1_ARATH3.981e-1329.37Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6281 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739889 ID=CK739889; Name=CK739889; organism=Citrus sinensis; type=EST; length=533bp
GGAGAATTCACCAATAAATAATGTCAGGTACGGCTCAAGCTTTGTTCCCC
ATGTGGAAAGGGCTCTCGAGTGGAAAGACTTTCTCAGCCTGTTTTATGTT
TCTGAGGAAGAAACTTCTGCTTTTTGGCCTCCTGTTTGCAAGGATGAAAT
GTTGGAGTACATGAGGAGTTCTGAAGTTCTCATCAAACGTTTAATGGATG
TGCTAGTAAAGGGGCTAAACGTGAAACGAATTGATGAAATAAGAGAACCT
ATGTTGTTGGGCTCAAGAAGAGTTAACCTCAACTATTATCCTATGTGTCC
CAATCCTGAACTCACAGTTGGCGTAGGCCGTCATTCAGATATTTCAACAT
TCACTATCCTCCTCCAAGATGACATCGGGGGACTTCACGTGCGAAAGGAC
AATGGTACTGACTGGATTCATGTCGCTCCAATTAGCGGATCACTCATTAT
CAACATTGGTGATGCATTGCAAATCATGAGCAATGGTCGATACAAAAGTA
TTGAGCATTGTGTGATTGCCAATGGAAGCCAGA
back to top