CK739889

Overview
NameCK739889
Unique NameCK739889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.281e-11
Identity = 39/163 (23.93%), Postives = 87/163 (53.37%), Query Frame = 2
Query:   65 LEWKDFLSL---FYVSEEETSAFW---PPVCKDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLL--GSRRVNLNYYPMCPNPELT--VGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            L W +++ L     +   +T+A +   P + ++ + EY++  + +  + ++++ + L ++  +++   + +      + +N+YP      +   +G G H+D    ++L  +D  GL +   +GT W+ V P   S  + +GD LQ+M+NGR+KS++H V+ N
Sbjct:  103 LGWLEYILLNANLCLESHKTTAIFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGT-WVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTN 264          
BLAST of CK739889 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 47/160 (29.38%), Postives = 80/160 (50.00%), Query Frame = 2
Query:   56 ERALEWKDFLSL-FYVSEEETSAFWPPV---CKDEMLEYMRSSEVLIKRLMDVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 523
            E  L WKD L+   +  +++    WP      ++ + +Y      L  R++D + +GL +K      E  L   + +  NYYP CP+P  T+G G H D +  T LLQ D+ GL         WI V PI  + ++N+G  L++++N +++   H V+ +
Sbjct:  123 EEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGLKLGYFDNE--LSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLIT-LLQQDLPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTD 279          
The following BLAST results are available for this feature:
BLAST of CK739889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
G2OX3_ARATH1.281e-1123.93Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
HY6H_HYONI2.853e-1129.38Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6281 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739889 ID=CK739889; Name=CK739889; organism=Citrus sinensis; type=EST; length=533bp
GGAGAATTCACCAATAAATAATGTCAGGTACGGCTCAAGCTTTGTTCCCC
ATGTGGAAAGGGCTCTCGAGTGGAAAGACTTTCTCAGCCTGTTTTATGTT
TCTGAGGAAGAAACTTCTGCTTTTTGGCCTCCTGTTTGCAAGGATGAAAT
GTTGGAGTACATGAGGAGTTCTGAAGTTCTCATCAAACGTTTAATGGATG
TGCTAGTAAAGGGGCTAAACGTGAAACGAATTGATGAAATAAGAGAACCT
ATGTTGTTGGGCTCAAGAAGAGTTAACCTCAACTATTATCCTATGTGTCC
CAATCCTGAACTCACAGTTGGCGTAGGCCGTCATTCAGATATTTCAACAT
TCACTATCCTCCTCCAAGATGACATCGGGGGACTTCACGTGCGAAAGGAC
AATGGTACTGACTGGATTCATGTCGCTCCAATTAGCGGATCACTCATTAT
CAACATTGGTGATGCATTGCAAATCATGAGCAATGGTCGATACAAAAGTA
TTGAGCATTGTGTGATTGCCAATGGAAGCCAGA
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