CK739899

Overview
NameCK739899
Unique NameCK739899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 3
Query:    9 QTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            Q EEV+FDHLHA AF    LG TILGP +NI+T+++  LQ YI  +YTA RMV+  +G
Sbjct:  166 QVEEVVFDHLHAAAFPENALGYTILGPKENIQTLSQADLQAYIKNNYTADRMVVVGAG 223          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.032e-12
Identity = 28/60 (46.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            +   + V+FD+LHATAFQ TPL + + GP++N++ +++  L +Y+  HY APRMV+AA+G
Sbjct:  176 DASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLSRHYKAPRMVLAAAG 235          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.032e-12
Identity = 28/60 (46.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            +    +V+F++LHATAFQ TPL + + GP++N++ +++  L  Y+ THY APRMV+AA+G
Sbjct:  176 DASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMVLAAAG 235          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   15 EEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 185
            +EV+FDHLH   ++  PLGRTILGP +NIK+IT+  L++YI  +Y   RMV+A +GA
Sbjct:  159 DEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGA 215          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 27/60 (45.00%), Postives = 46/60 (76.67%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            +   + V+FD+LHATAFQ TPL + + GP++N++ +++  L +Y++ +Y APRMV+AA+G
Sbjct:  176 DASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLNRNYKAPRMVLAAAG 235          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNI-KTITKEHLQNYIHTHYTAPRMVIAASGA 185
            E + +EV+ DHLH+ AF+ + LG +ILGP +NI K+ITK  + +++ THYT PRM +  SGA
Sbjct:  155 EARIDEVLMDHLHSAAFEGSGLGLSILGPLENIQKSITKGMIDDFVKTHYTGPRMALVGSGA 216          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 27/55 (49.09%), Postives = 44/55 (80.00%), Query Frame = 3
Query:   18 EVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            +V+F++LHATAFQ TPL +++ GP++N++ +++  L  Y+  HY APRMV+AA+G
Sbjct:  181 DVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAG 235          
The following BLAST results are available for this feature:
BLAST of CK739899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
MPPB_BLAEM1.386e-1256.90Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_RAT4.032e-1246.67Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_HUMAN4.032e-1246.67Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_YEAST6.878e-1254.39Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_MOUSE1.532e-1145.00Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_EUGGR2.001e-1150.00Ubiquinol-cytochrome-c reductase complex core prot... [more]
QCR1_BOVIN2.001e-1149.09Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6291 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739899 ID=CK739899; Name=CK739899; organism=Citrus sinensis; type=EST; length=227bp
TTGAGGGGCAAACAGAGGAAGTCATTTTTGATCATTTGCATGCAACTGCA
TTCCAGTACACTCCTTTGGGGAGAACTATTCTCGGTCCTGCTCAGAATAT
CAAGACAATCACAAAAGAACATCTGCAGAACTATATTCACACTCACTATA
CTGCTCCCAGAATGGTGATTGCTGCTTCTGGAGCTGTGAAGCATGAAGAA
GTTGTTGAGCAAGTGAAGAAATTGTTC
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