CK739901 | Citrus Genome Database

Overview


Name	CK739901
Unique Name	CK739901
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	290

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2225	contig	Csv1_Contig2225:119..412.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.034e-20
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3

Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPF**PHMQEVY 230
            MA KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGP   P+   V+
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVF 50

HSP 2 Score: 44.669 bits (104), Expect = 6.034e-20
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 2

Query:  209 APYAGGVFLVTIHFPPDYPFQAPK 280
            +PYAGGVF + IHFP DYPF+ PK
Sbjct:   43 SPYAGGVFFLAIHFPTDYPFKPPK 66

BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.034e-20
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPF**PHMQEVY 230
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP   P+   V+
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF 50

HSP 2 Score: 45.8246 bits (107), Expect = 6.034e-20
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2

Query:  209 APYAGGVFLVTIHFPPDYPFQAPKGCF 289
            +PY GGVF +TIHFP DYPF+ PK  F
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAF 69

BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.034e-20
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPF**PHMQEVY 230
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP   P+   V+
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF 50

HSP 2 Score: 45.8246 bits (107), Expect = 6.034e-20
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2

Query:  209 APYAGGVFLVTIHFPPDYPFQAPKGCF 289
            +PY GGVF +TIHFP DYPF+ PK  F
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAF 69

BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.034e-20
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPF**PHMQEVY 230
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP   P+   V+
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF 50

HSP 2 Score: 45.8246 bits (107), Expect = 6.034e-20
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2

Query:  209 APYAGGVFLVTIHFPPDYPFQAPKGCF 289
            +PY GGVF +TIHFP DYPF+ PK  F
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAF 69

BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.034e-20
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPF**PHMQEVY 230
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP   P+   V+
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF 50

HSP 2 Score: 45.8246 bits (107), Expect = 6.034e-20
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2

Query:  209 APYAGGVFLVTIHFPPDYPFQAPKGCF 289
            +PY GGVF +TIHFP DYPF+ PK  F
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAF 69

BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.034e-20
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPF**PHMQEVY 230
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP   P+   V+
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF 50

HSP 2 Score: 45.8246 bits (107), Expect = 6.034e-20
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2

Query:  209 APYAGGVFLVTIHFPPDYPFQAPKGCF 289
            +PY GGVF +TIHFP DYPF+ PK  F
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAF 69

BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.034e-20
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPF**PHMQEVY 230
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP   P+   V+
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF 50

HSP 2 Score: 45.8246 bits (107), Expect = 6.034e-20
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2

Query:  209 APYAGGVFLVTIHFPPDYPFQAPKGCF 289
            +PY GGVF +TIHFP DYPF+ PK  F
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAF 69

BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.034e-20
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPF**PHMQEVY 230
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP   P+   V+
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF 50

HSP 2 Score: 45.8246 bits (107), Expect = 6.034e-20
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2

Query:  209 APYAGGVFLVTIHFPPDYPFQAPKGCF 289
            +PY GGVF +TIHFP DYPF+ PK  F
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAF 69

BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.034e-20
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPF**PHMQEVY 230
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP   P+   V+
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF 50

HSP 2 Score: 45.8246 bits (107), Expect = 6.034e-20
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2

Query:  209 APYAGGVFLVTIHFPPDYPFQAPKGCF 289
            +PY GGVF +TIHFP DYPF+ PK  F
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAF 69

BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.034e-20
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPF**PHMQEVY 230
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP   P+   V+
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVF 50

HSP 2 Score: 45.8246 bits (107), Expect = 6.034e-20
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 2

Query:  209 APYAGGVFLVTIHFPPDYPFQAPKGCF 289
            +PY GGVF +TIHFP DYPF+ PK  F
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAF 69

The following BLAST results are available for this feature:

BLAST of CK739901 vs. ExPASy Swiss-Prot

BLAST of CK739901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41


Match Name	E-value	Identity	Description
UBC1_MAGGR	6.034e-20	68.00	Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor...	[more]
UB2D3_RAT	6.034e-20	66.00	Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve...	[more]
UB2D3_PONAB	6.034e-20	66.00	Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii...	[more]
UB2D3_MOUSE	6.034e-20	66.00	Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus...	[more]
UB2D3_MACFA	6.034e-20	66.00	Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci...	[more]
UB2D3_HUMAN	6.034e-20	66.00	Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens...	[more]
UB2D3_BOVIN	6.034e-20	66.00	Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G...	[more]
UB2D2_XENLA	6.034e-20	66.00	Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev...	[more]
UB2D2_RAT	6.034e-20	66.00	Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve...	[more]
UB2D2_PIG	6.034e-20	66.00	Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6293 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61F04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739901 ID=CK739901; Name=CK739901; organism=Citrus sinensis; type=EST; length=290bp
CGCTCTCCGATCCTGTTCTCTGCCGCGCAAGGTCTTAAGGTTCGTTGTAG
TTTCAAATTTTAATAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTT
GAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTG
GCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGGCCC
TTCTGATAGCCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTT
CCTCCTGATTATCCCTTTCAAGCCCCCAAAGGTTGCTTTT