CK739907

Overview
NameCK739907
Unique NameCK739907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1283 contig Csv1_Contig1283:265..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.018e-33
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            +S N+ + FA+A++DWKET E+HVFKADLPG+          +G VL ISG+RS EKEDKNDKWHRVER  G+F+RRFRLPENAK+DQVKA MENGVL               +I+I+G
Sbjct:   32 TSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.942e-33
Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = 2
Query:    5 PLGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            P  S S E S F + +VDWKET+EAHV KAD+PGL          D RVLQISGER+VEKEDKND WHRV+R  GKF+RRFRLPENAK++QVKA MENGVL                I+I+G
Sbjct:   33 PTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.942e-33
Identity = 69/119 (57.98%), Postives = 84/119 (70.59%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            +S  + + FA+A+VDWKET E+HVFKADLPG+          +G VL ISG+RS EKEDKNDKWHRVER  G+F+RRFRLPENAK+DQVKASMENGVL               +I+I+G
Sbjct:   31 TSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.148e-33
Identity = 71/121 (58.68%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG*N 376
            S++ +V+ F +A+VDWKET EAHVFKADLPGL          D  VLQISGERS E E+KNDKWHRVER  GKF+RRFRLPENAK+++VKA+MENGVL               SI I+G N
Sbjct:   41 STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISGAN 161          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 6.723e-33
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            +S N+ + FA+A++DWKET E+HVFKADLPG+          +G VL ISG+RS EKEDKNDKWHRVER  G+F+RRFRLPENAK+DQVKA +ENGVL               +I+I+G
Sbjct:   32 TSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 8.781e-33
Identity = 68/121 (56.20%), Postives = 83/121 (68.60%), Query Frame = 2
Query:    8 LGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            +   S+E + FA+A+VDWKET EAHVFK DLPG+          DG VL +SGERS EKEDKNDKWHRVER  GKFVRRFRLPE+AK+++VKA +ENGVL               +I+I+G
Sbjct:   31 ISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.498e-32
Identity = 70/119 (58.82%), Postives = 82/119 (68.91%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            S S E S F + +VDWKET EAHVF+AD+PGL          D RVLQISGER++EKEDKND WHRVER  G F+RRFRLPENAK++QVKASMENGVL               +I+I+G
Sbjct:   35 SLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.498e-32
Identity = 68/115 (59.13%), Postives = 80/115 (69.57%), Query Frame = 2
Query:   26 EVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            +V+ F +A+VDW+ET EAHVFKADLPGL          DG +LQISGERS E E+KNDKWHRVER  GKF RRFRLPENAK++++KASMENGVL               SI I+G
Sbjct:   43 DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.498e-32
Identity = 70/122 (57.38%), Postives = 85/122 (69.67%), Query Frame = 2
Query:    5 PLGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            P G+SS E + FA A++DWKET EAHVFKAD+PGL          DG +LQISGER+ E+E+K D+WHRVER  GKF+RRFRLP+NAK +Q+KASMENGVL               SIQI+G
Sbjct:   41 PRGASS-ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 3.337e-32
Identity = 68/118 (57.63%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   17 SSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            ++++ + FA A++DWKET EAHVFKAD+PGL          DG VLQISGER  E+E+K DKWHRVER  GKF+RRFRLPEN K +Q+KASMENGVL               SIQITG
Sbjct:   37 ANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
The following BLAST results are available for this feature:
BLAST of CK739907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HS16B_ORYSJ3.018e-3357.1416.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP15_SOYBN3.942e-3358.2017.6 kDa class I heat shock protein OS=Glycine max... [more]
HS16C_ORYSJ3.942e-3357.9816.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS181_ARATH5.148e-3358.6818.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16A_ORYSJ6.723e-3356.3016.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS16A_WHEAT8.781e-3356.2016.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP13_SOYBN1.498e-3258.8217.5 kDa class I heat shock protein OS=Glycine max... [more]
HS17C_ARATH1.498e-3259.1317.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS17A_ORYSJ1.498e-3257.3817.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ3.337e-3257.6317.4 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6299 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739907 ID=CK739907; Name=CK739907; organism=Citrus sinensis; type=EST; length=458bp
GGCGCCCCTTGGCTCCTCCAGCAACGAGGTGTCAACATTCGCCAGTGCTC
AAGTCGATTGGAAAGAAACCCGGGAAGCTCATGTTTTCAAGGCGGATCTT
CCGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAGGACGGGAGAGT
CCTTCAGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGACAAGAACGACA
AATGGCACCGTGTTGAGAGGGGCCGCGGCAAGTTCGTGAGGAGGTTCCGG
TTGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGGAGAATGG
TGTCCTCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAAGCCTGAGGTCA
AATCCATTCAGATCACTGGTTGAAACTCTCCGTTAATTGCAGCCTTTTTA
ATTAGGTTCTTGTTTTGTTCTGTGTGTTAATGAACGATGTGCGATTGCTG
TTAAGTGT
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